Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   BSR20_RS09330 Genome accession   NZ_CP018189
Coordinates   2021688..2023658 (-) Length   656 a.a.
NCBI ID   WP_156209965.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2016688..2028658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS09315 (BSR20_09420) - 2017291..2018181 (-) 891 WP_149561142.1 histidine kinase -
  BSR20_RS09320 (BSR20_09425) - 2018241..2019548 (-) 1308 WP_002885760.1 GHKL domain-containing protein -
  BSR20_RS09325 (BSR20_09430) gltX 2019998..2021452 (-) 1455 WP_037611119.1 glutamate--tRNA ligase -
  BSR20_RS09330 (BSR20_09435) amiA 2021688..2023658 (-) 1971 WP_156209965.1 peptide ABC transporter substrate-binding protein Regulator
  BSR20_RS09335 (BSR20_09440) rplA 2023840..2024529 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  BSR20_RS09340 (BSR20_09445) rplK 2024629..2025054 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  BSR20_RS09345 (BSR20_09450) - 2025226..2025579 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  BSR20_RS09350 (BSR20_09455) - 2025674..2026171 (-) 498 WP_156209966.1 beta-class carbonic anhydrase -
  BSR20_RS09355 (BSR20_09460) - 2026323..2027018 (-) 696 WP_037598509.1 TIGR00266 family protein -
  BSR20_RS09360 (BSR20_09465) radA 2027107..2028468 (-) 1362 WP_073686093.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72873.74 Da        Isoelectric Point: 5.0816

>NTDB_id=206940 BSR20_RS09330 WP_156209965.1 2021688..2023658(-) (amiA) [Streptococcus salivarius strain ICDC3]
MKKSKVFLLAAVGLLSVGVLTACSSSSKTSGKTYNYVYGSDPATLDYLATNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
EDWSVSQDGLTYTYKIRKGLKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSIKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNGDFLKSKGKDFGKSTDPTSILYNGPYLLKALTTKSSIEFTKNENYWDKD
HVYFDNIKLTYDDGSDQESLERNFTDGVYNLARLFPTSSNYSKVEKQYKDNIFYTQPGSAVEGVGINIDRQTYGHTSKEN
DQQKTSTKTALLNKDFRQSLGFAIDRTNYAAQLNGKEGGSTAVRNIFVKPDFVQADGKDFGTMVMDQLPAYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSSKITVNQVQSIKQSVESALGKDNVVLDIHQLSADDFNN
ITYSASNAAAEDWDLSVGVAWDPDYLDPSTYLDVLKTTSSENTKSFMGYDDPNSQAVQKVGLKEYDQLVEDASKETTDLK
VRYEKYAKAQAWLTDSALYLPTTTYNGAAAVISRIKPFSGAYAQAGDKGSSYYFKYLKSQDDIVTKKQYDSAYKDWLKER
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=206940 BSR20_RS09330 WP_156209965.1 2021688..2023658(-) (amiA) [Streptococcus salivarius strain ICDC3]
ATGAAAAAGAGTAAGGTATTTTTACTGGCAGCCGTAGGCCTGTTATCTGTAGGTGTTTTAACGGCTTGCTCGTCATCAAG
TAAGACGTCTGGTAAGACTTATAATTATGTCTATGGTAGTGACCCTGCAACCTTGGACTATCTTGCTACAAACAAGAAAA
ATATGACTACAGCTGTTAGTAACGGTGTTGATGGTTTGTTTGAAAATGACCAATATGGGAATTTAAAACCTTCTGTCGCT
GAAGACTGGTCTGTTTCTCAAGATGGTTTGACATATACTTACAAGATTCGTAAGGGACTTAAATGGTACACTTCAGATGG
CGAAGAATATGCCAATGTAACAGCTAAGGACTTTGTAACAGGTCTTAAGCATGCTGCGGATACAAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAATTAAGGGCTTGAATGATTACCTTTCAGGTGCCAACAAGGACTTTTCAAATGTAGGTATCAAG
GCTGTTGATGATTACACCTTGCAATATACACTTAGTCAACCAGAACCTTACTGGAATTCAAAATTGACTTACTCTGTTAC
TTGGCCTGTTAATGGAGACTTCTTGAAATCTAAAGGTAAAGATTTTGGTAAGTCAACAGACCCAACATCTATCCTTTATA
ACGGTCCATACCTTCTTAAGGCTTTGACAACGAAGTCATCTATTGAGTTCACCAAGAATGAAAACTATTGGGATAAGGAT
CACGTCTATTTTGATAATATCAAATTGACTTATGATGATGGATCAGACCAAGAGTCTTTGGAACGCAACTTTACAGATGG
TGTATACAACTTAGCACGTCTATTCCCAACAAGTTCTAACTATTCCAAAGTTGAAAAACAGTACAAAGATAATATTTTCT
ATACGCAACCTGGATCAGCTGTAGAAGGTGTTGGTATTAATATTGATCGTCAAACTTATGGTCATACATCTAAAGAAAAT
GACCAGCAAAAGACATCAACTAAGACAGCTCTTCTCAATAAGGATTTCCGTCAATCATTAGGTTTTGCTATTGACCGTAC
AAATTACGCCGCACAACTTAATGGTAAGGAAGGTGGAAGTACTGCCGTCCGTAATATCTTTGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAGGACTTCGGAACAATGGTAATGGATCAACTTCCAGCTTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGACGGTCTTTATAACCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCTAAGGAAGCCCTTCAAGCAGA
AGGAGTTCAGTTCCCAATTCATTTGGATGTCCCTGTTAATCAATCAAGTAAAATTACTGTGAATCAGGTACAATCAATTA
AACAGTCTGTTGAATCTGCTCTTGGAAAAGACAATGTTGTGCTTGATATTCACCAATTGTCGGCTGATGATTTTAACAAC
ATCACTTACTCTGCATCAAATGCAGCTGCAGAAGATTGGGACTTGTCAGTGGGTGTGGCTTGGGACCCTGATTACCTTGA
CCCTTCAACTTATCTTGATGTCTTGAAAACGACAAGTAGCGAAAATACTAAATCCTTCATGGGTTATGACGATCCAAATA
GTCAAGCAGTTCAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGAAGATGCCTCTAAGGAAACAACAGACTTGAAG
GTTCGTTATGAAAAATATGCAAAAGCTCAAGCATGGTTGACAGATAGTGCCCTCTATCTTCCAACAACTACTTATAACGG
TGCAGCTGCTGTAATTTCTCGTATTAAGCCATTCTCAGGAGCTTATGCTCAAGCTGGTGATAAAGGTTCTTCATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTAACTAAAAAACAATACGACTCAGCTTATAAAGATTGGCTTAAAGAAAGA
GCGAAATCTAATGACAAAGCTCAAAAAGATCTTGCCAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.817

100

0.698
  amiA3 Streptococcus thermophilus LMD-9

69.102

100

0.692
  amiA3 Streptococcus thermophilus LMG 18311

68.341

100

0.684

Multiple sequence alignment