Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BSR20_RS09360 Genome accession   NZ_CP018189
Coordinates   2027107..2028468 (-) Length   453 a.a.
NCBI ID   WP_073686093.1    Uniprot ID   A0AAW6D859
Organism   Streptococcus salivarius strain ICDC3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2022107..2033468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS09335 (BSR20_09440) rplA 2023840..2024529 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  BSR20_RS09340 (BSR20_09445) rplK 2024629..2025054 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  BSR20_RS09345 (BSR20_09450) - 2025226..2025579 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  BSR20_RS09350 (BSR20_09455) - 2025674..2026171 (-) 498 WP_156209966.1 beta-class carbonic anhydrase -
  BSR20_RS09355 (BSR20_09460) - 2026323..2027018 (-) 696 WP_037598509.1 TIGR00266 family protein -
  BSR20_RS09360 (BSR20_09465) radA 2027107..2028468 (-) 1362 WP_073686093.1 DNA repair protein RadA Machinery gene
  BSR20_RS09365 (BSR20_09470) - 2028465..2028932 (-) 468 WP_061652425.1 isochorismatase family protein -
  BSR20_RS09370 (BSR20_09475) - 2028943..2029389 (-) 447 WP_156209967.1 dUTP diphosphatase -
  BSR20_RS09375 (BSR20_09480) - 2029597..2030199 (+) 603 WP_002886986.1 NADPH-dependent FMN reductase -
  BSR20_RS09380 (BSR20_09485) - 2030218..2031468 (+) 1251 WP_002885631.1 NAD(P)H-dependent oxidoreductase -
  BSR20_RS09385 (BSR20_09490) - 2031585..2032376 (+) 792 Protein_1801 formate/nitrite transporter family protein -
  BSR20_RS09390 (BSR20_09495) - 2032385..2032945 (+) 561 WP_013991240.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49463.86 Da        Isoelectric Point: 6.6528

>NTDB_id=206941 BSR20_RS09360 WP_073686093.1 2027107..2028468(-) (radA) [Streptococcus salivarius strain ICDC3]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=206941 BSR20_RS09360 WP_073686093.1 2027107..2028468(-) (radA) [Streptococcus salivarius strain ICDC3]
ATAGCAAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGTTGCCCCAACTG
TTCTTCTTGGTCCTCTTTTGAGGAGGAAGTTGAGGTGCAGGAGGTGAAAAATGCTCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAATTAAAAGAAGTCTCTTCAATTAATTATGCCCGCATAAAGACTGACATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGTAGTCTGGTTCTTATTGGAGGAGATCCAGGGATAGGGAAATCGACTCTTCTCTTACA
AGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GCGAACGTTTAGGTGATATTGATAACGAATTTTATCTTTATGCTGAGACTAATATGCAAGCCGTTCGCAGCCAAGTGGAG
GCTATAAAACCCGATTTCCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCAGGCGTTCAAGGCTCTGT
ATCTCAGGTTCGTGAAGTTACTGCTGAACTCATGCAGATTGCCAAAACCAATAACATTGCTACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAGTTGGCTGGACCACGTATGTTGGAACACATGGTGGATACTGTGCTCTATTTTGAGGGTGAACGT
CATCACACCTTCCGTATTTTACGAGCAGTCAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAGGTGCTAAATCCTAGCCAGGTTTTCTTAGAGGAACGCCTAGACGGTGCTACAGGTTCTGCCATTG
TTGTGACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACACCAACCGTCTTTGGTAATGCCAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTTATTATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCTTATTTAAAATCAGCTGGCGGTGTCAAATTGGATGAACCAGCTATTGACCTTGCTGTAGCCGTTGCGA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCTTTTATAGGAGAAATTGGGTTGACTGGAGAGATTCGC
CGAGTAACTCGCATTGAACAGCGTATTAATGAAGCTGCTAAATTAGGTTTTACTAAGATTTATGCTCCTAAAAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATCCAGGTCATTGGGGTCACGACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.962

100

0.89
  radA Streptococcus pneumoniae D39

88.962

100

0.89
  radA Streptococcus pneumoniae R6

88.962

100

0.89
  radA Streptococcus pneumoniae TIGR4

88.962

100

0.89
  radA Streptococcus mitis NCTC 12261

88.962

100

0.89
  radA Streptococcus mitis SK321

88.962

100

0.89
  radA Bacillus subtilis subsp. subtilis str. 168

61.589

100

0.616

Multiple sequence alignment