Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   BSR19_RS09510 Genome accession   NZ_CP018187
Coordinates   2075159..2077129 (-) Length   656 a.a.
NCBI ID   WP_060973051.1    Uniprot ID   A0AB37DCW0
Organism   Streptococcus salivarius strain ICDC2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2070159..2082129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS09495 (BSR19_09625) - 2070750..2071640 (-) 891 WP_156247043.1 histidine kinase -
  BSR19_RS09500 (BSR19_09630) - 2071696..2073003 (-) 1308 WP_037600068.1 GHKL domain-containing protein -
  BSR19_RS09505 (BSR19_09635) gltX 2073469..2074923 (-) 1455 WP_060973050.1 glutamate--tRNA ligase -
  BSR19_RS09510 (BSR19_09640) amiA 2075159..2077129 (-) 1971 WP_060973051.1 peptide ABC transporter substrate-binding protein Regulator
  BSR19_RS09515 (BSR19_09645) rplA 2077311..2078000 (-) 690 WP_037598508.1 50S ribosomal protein L1 -
  BSR19_RS09520 (BSR19_09650) rplK 2078100..2078525 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  BSR19_RS09525 (BSR19_09655) - 2078697..2079050 (+) 354 WP_060973052.1 DUF3397 domain-containing protein -
  BSR19_RS09530 (BSR19_09660) - 2079145..2079642 (-) 498 WP_002886981.1 beta-class carbonic anhydrase -
  BSR19_RS09535 (BSR19_09665) - 2079794..2080489 (-) 696 WP_037598509.1 TIGR00266 family protein -
  BSR19_RS09540 (BSR19_09670) radA 2080578..2081939 (-) 1362 WP_082759652.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72961.80 Da        Isoelectric Point: 4.9566

>NTDB_id=206871 BSR19_RS09510 WP_060973051.1 2075159..2077129(-) (amiA) [Streptococcus salivarius strain ICDC2]
MKKSKVFLLAAVGLLSVGVLTACSSSSKTSGKTYNYVYGGDPATLDYLATNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
ENWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNGEFLKSKGKDFGKSTDPTSILYNGPYLLKSLTTKSSIEFTKNENYWDKD
NVFFDTVKLTYDDGTDQESLERNFTDGVYNLARLYPTSSNYSKVEKQYKDNIFYTQPGAAVEGVGINIDRQTYGHTSKEN
DQQKTSTKTALLNKDFRQALGFAIDRTNYAAQLNGKEGGSTAVRNIYVKPDFVQADGKDFGTMVMDQLPSYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSNKIFVNQVQSLKQSIESALGKDNVVLDLHQLSTDDFYN
ITYSASNAAAEDWDLSVGVAWEPDYLDPSTYLDVLKTTNSENTKSFMGYDDPNSQAVQKVGLKEYDQLVDDASKETTDLT
ARYEKYAKAQAWLTDSALYIPTTTYNGAAAVISRIKPFSGAYAQAGDKGSTYYFKYLKSQDDIVTKKQYDSAYKDWLKER
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=206871 BSR19_RS09510 WP_060973051.1 2075159..2077129(-) (amiA) [Streptococcus salivarius strain ICDC2]
ATGAAAAAGAGTAAGGTATTTTTACTGGCAGCCGTAGGCCTGTTATCTGTAGGTGTTTTAACGGCTTGCTCGTCATCAAG
TAAGACGTCTGGTAAGACTTATAATTATGTCTACGGTGGCGATCCTGCAACCCTAGACTATCTTGCTACAAACAAGAAAA
ATATGACGACAGCTGTGAGTAATGGTGTTGATGGTTTGTTTGAAAATGACCAATATGGGAATCTAAAACCTTCTGTAGCC
GAAAACTGGTCTGTTTCTCAAGATGGTTTGACATATACTTACAAGATTCGTAAGGGTGTCAAATGGTATACTTCAGATGG
TGAAGAGTATGCTGATGTGACGGCTAAGGACTTTGTGACAGGACTTAAACATGCTGCGGATACAAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAGTTAAGGGCTTGAATGATTACCTTTCAGGTGCCAACAAGGACTTTTCAAATGTAGGTATCAAG
GCTGTTGATGATTACACCTTGCAATATACGCTTAGTCAACCAGAACCTTATTGGAATTCAAAATTGACCTACTCTGTTAC
TTGGCCTGTTAATGGAGAATTCTTGAAATCTAAAGGTAAAGACTTTGGTAAGTCAACAGATCCGACTTCTATTCTCTATA
ACGGTCCATACCTTCTTAAATCTTTGACAACGAAATCATCTATTGAGTTCACCAAGAATGAAAACTATTGGGATAAGGAT
AATGTCTTCTTTGATACAGTTAAATTGACTTACGATGATGGTACAGACCAAGAATCCTTGGAACGTAACTTCACAGATGG
AGTCTATAACTTAGCTCGTCTATACCCAACTAGTTCAAACTATTCTAAAGTTGAAAAACAGTACAAAGACAATATTTTCT
ATACACAACCTGGAGCAGCTGTAGAAGGTGTCGGTATTAATATCGATCGTCAAACTTATGGTCATACATCTAAAGAAAAT
GACCAGCAAAAGACATCAACTAAGACAGCTCTTCTTAACAAAGATTTCCGTCAAGCATTAGGTTTTGCTATTGACCGTAC
GAATTATGCTGCACAACTTAACGGTAAAGAGGGTGGTAGTACTGCCGTTCGTAATATCTATGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAAGATTTCGGAACTATGGTAATGGATCAATTACCAAGCTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGATGGTCTTTATAATCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCTAAGGAAGCTCTTCAAGCAGA
AGGGGTTCAGTTCCCAATCCATTTGGATGTTCCTGTCAATCAGTCAAATAAAATCTTTGTGAATCAAGTGCAGTCACTTA
AACAATCTATTGAATCAGCTCTTGGAAAAGATAATGTTGTACTTGATCTTCACCAATTGTCAACTGATGATTTCTATAAT
ATTACCTACTCTGCTTCAAATGCAGCTGCAGAGGATTGGGACTTGTCAGTAGGTGTGGCTTGGGAGCCTGATTACCTTGA
TCCATCAACTTATCTTGATGTCTTGAAGACTACAAATAGTGAAAATACTAAATCTTTCATGGGTTATGACGATCCAAATA
GTCAAGCGGTTCAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGATGATGCTTCTAAGGAAACAACAGACTTGACG
GCTCGTTATGAAAAATATGCAAAAGCTCAGGCATGGTTGACGGATAGTGCACTTTATATCCCAACGACTACTTATAATGG
TGCAGCCGCTGTCATTTCTCGTATTAAGCCATTCTCAGGAGCATATGCTCAAGCTGGTGATAAAGGTTCTACATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTAACTAAGAAACAATACGACTCAGCTTATAAAGATTGGCTTAAAGAAAGA
GCGAAATCTAATGACAAAGCTCAAAAAGATCTTGCTAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.97

100

0.7
  amiA3 Streptococcus thermophilus LMD-9

68.189

100

0.683
  amiA3 Streptococcus thermophilus LMG 18311

67.428

100

0.675

Multiple sequence alignment