Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BSR19_RS09540 Genome accession   NZ_CP018187
Coordinates   2080578..2081939 (-) Length   453 a.a.
NCBI ID   WP_082759652.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2075578..2086939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS09515 (BSR19_09645) rplA 2077311..2078000 (-) 690 WP_037598508.1 50S ribosomal protein L1 -
  BSR19_RS09520 (BSR19_09650) rplK 2078100..2078525 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  BSR19_RS09525 (BSR19_09655) - 2078697..2079050 (+) 354 WP_060973052.1 DUF3397 domain-containing protein -
  BSR19_RS09530 (BSR19_09660) - 2079145..2079642 (-) 498 WP_002886981.1 beta-class carbonic anhydrase -
  BSR19_RS09535 (BSR19_09665) - 2079794..2080489 (-) 696 WP_037598509.1 TIGR00266 family protein -
  BSR19_RS09540 (BSR19_09670) radA 2080578..2081939 (-) 1362 WP_082759652.1 DNA repair protein RadA Machinery gene
  BSR19_RS09545 (BSR19_09675) - 2081936..2082403 (-) 468 WP_060973054.1 isochorismatase family protein -
  BSR19_RS09550 (BSR19_09680) - 2082413..2082859 (-) 447 WP_002886985.1 dUTP diphosphatase -
  BSR19_RS09555 (BSR19_09685) - 2083066..2083668 (+) 603 WP_002886986.1 NADPH-dependent FMN reductase -
  BSR19_RS09560 (BSR19_09690) - 2083687..2084937 (+) 1251 WP_060973055.1 NAD(P)H-dependent oxidoreductase -
  BSR19_RS09565 (BSR19_09695) - 2085054..2085845 (+) 792 WP_060973056.1 formate/nitrite transporter family protein -
  BSR19_RS09570 (BSR19_09700) - 2085854..2086414 (+) 561 WP_060973057.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49507.91 Da        Isoelectric Point: 6.6528

>NTDB_id=206872 BSR19_RS09540 WP_082759652.1 2080578..2081939(-) (radA) [Streptococcus salivarius strain ICDC2]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
TIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQIIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=206872 BSR19_RS09540 WP_082759652.1 2080578..2081939(-) (radA) [Streptococcus salivarius strain ICDC2]
ATAGCAAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAACTG
TTCTTCTTGGTCCTCTTTTGAAGAAGAGGTTGAGGTGCAGGAGGTGAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CTAAACCAACTAAATTAAAAGAAGTATCCTCAATCAATTATGCCCGCATAAAGACTGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGCAGTCTGGTTCTTATTGGAGGAGATCCAGGGATAGGGAAATCAACCCTCCTCTTACA
GGTGTCAACGCAACTGGCTAACAAGGGTACGGTCCTCTATGTATCTGGAGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GCGAACGTTTAGGTGATATTGATAACGAATTTTATCTTTATGCTGAGACCAATATGCAAGCGGTTCGCAGTCAAGTAGAG
ACCATCAAACCTGATTTCCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCTGGCGTTCAAGGTTCTGT
ATCTCAGGTTCGTGAAGTCACTGCTGAACTCATGCAGATTGCTAAAACCAATAACATTGCCACTTTTATTGTTGGACATG
TGACCAAGGAGGGACAACTGGCTGGGCCACGTATGTTGGAACACATGGTGGATACGGTACTCTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTTTACGAGCAGTCAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAAGTGCTAAACCCTAGCCAGGTTTTCTTAGAGGAACGCCTAGACGGTGCCACAGGTTCTGCCATTG
TTGTGACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACACCAACCGTCTTTGGTAATGCCAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTCATTATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCGGCTGGTGGTGTCAAATTGGACGAGCCAGCTATTGACCTTGCTGTAGCCGTTGCGA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCTTTCATAGGAGAAATTGGGTTGACTGGAGAGATTCGC
CGAGTAACTCGCATTGAACAGCGTATTAATGAGGCTGCTAAATTAGGTTTTACTAAGATTTATGCTCCTAAAAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATCCAGATCATTGGGGTCACGACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614

Multiple sequence alignment