Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   BSR19_RS08095 Genome accession   NZ_CP018187
Coordinates   1789673..1790368 (-) Length   231 a.a.
NCBI ID   WP_049545585.1    Uniprot ID   A0AB37DBU9
Organism   Streptococcus salivarius strain ICDC2     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1784673..1795368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS08080 (BSR19_08190) - 1785484..1786029 (-) 546 WP_049545582.1 GNAT family N-acetyltransferase -
  BSR19_RS08085 (BSR19_08195) - 1786095..1787357 (-) 1263 WP_002884638.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  BSR19_RS08090 (BSR19_08200) comEC/celB 1787443..1789683 (-) 2241 WP_156246978.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BSR19_RS08095 (BSR19_08205) comEA 1789673..1790368 (-) 696 WP_049545585.1 helix-hairpin-helix domain-containing protein Machinery gene
  BSR19_RS08100 (BSR19_08210) - 1790477..1791232 (-) 756 WP_049545586.1 lysophospholipid acyltransferase family protein -
  BSR19_RS08105 (BSR19_08215) - 1791362..1792297 (+) 936 WP_049545587.1 polysaccharide deacetylase family protein -
  BSR19_RS08110 (BSR19_08220) - 1792347..1793111 (+) 765 WP_049545588.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BSR19_RS08115 (BSR19_08225) - 1793115..1793384 (+) 270 WP_008535312.1 GIY-YIG nuclease family protein -
  BSR19_RS08120 (BSR19_08230) - 1793591..1795177 (-) 1587 WP_049545589.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24546.54 Da        Isoelectric Point: 4.6690

>NTDB_id=206864 BSR19_RS08095 WP_049545585.1 1789673..1790368(-) (comEA) [Streptococcus salivarius strain ICDC2]
MKEKILAYVKDNRLFVSVIAVLMVIFCFFLWMTCGAGNSMEAETSYTDVTTLSTSSSKEGSKSLTEVSSQSKTEESEKDK
SKVTVDVKGAVANPGVYTLKASARVTDAIKVAGGMTEDADAKSINLAASLSDEEVIYVATKDENLSVLGQSGTSQVSDKG
GQTNAKDGKINLNTATAEELQTISGIGAKRAEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESIYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=206864 BSR19_RS08095 WP_049545585.1 1789673..1790368(-) (comEA) [Streptococcus salivarius strain ICDC2]
GTGAAGGAAAAGATTCTAGCCTATGTCAAAGATAATCGTTTGTTTGTGAGTGTCATCGCTGTACTGATGGTGATTTTTTG
CTTCTTTCTATGGATGACTTGTGGTGCCGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAACATTGTCAA
CCTCCTCATCCAAAGAAGGGTCAAAATCACTTACTGAAGTGTCTTCTCAGTCAAAGACTGAAGAAAGTGAAAAGGATAAG
TCAAAAGTAACAGTGGATGTTAAGGGGGCTGTGGCTAATCCAGGTGTTTATACCTTAAAAGCAAGCGCTAGGGTAACTGA
TGCCATCAAGGTCGCTGGAGGAATGACTGAGGATGCGGATGCTAAGAGTATTAATTTAGCCGCAAGCTTGTCAGACGAAG
AGGTTATCTATGTGGCAACTAAGGATGAAAACCTTTCTGTCCTTGGTCAATCAGGAACTAGTCAGGTGTCTGACAAGGGA
GGGCAAACTAATGCTAAGGATGGGAAAATTAACTTAAATACAGCGACTGCAGAGGAATTGCAAACCATTTCTGGAATTGG
AGCTAAGCGAGCAGAGGATATCATCGCCTATCGCGAAAGTCATGGCGGCTTTCAGTCCGTAGATGACCTGAAAAATGTTT
CAGGAATTGGTGATAAAACGTTAGATAAAATCAGAGAGTCCATCTATGTGGCTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(168-228)

SLBB domain (SLBB)

(85-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

88.745

100

0.887
  comEA/celA/cilE Streptococcus mitis SK321

40.435

99.567

0.403
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

40.175

99.134

0.398
  comEA Latilactobacillus sakei subsp. sakei 23K

34.855

100

0.364

Multiple sequence alignment