Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | CNQ48_RS10495 | Genome accession | NZ_CP023386 |
| Coordinates | 2069764..2070774 (+) | Length | 336 a.a. |
| NCBI ID | WP_000568521.1 | Uniprot ID | - |
| Organism | Escherichia coli strain 1190 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2064764..2075774
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNQ48_RS10465 (CNQ48_10465) | nudB | 2066488..2066940 (+) | 453 | WP_001308712.1 | dihydroneopterin triphosphate diphosphatase | - |
| CNQ48_RS10470 (CNQ48_10470) | yebC | 2066969..2067709 (+) | 741 | WP_000907234.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| CNQ48_RS10475 (CNQ48_10475) | ruvC | 2067744..2068265 (+) | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| CNQ48_RS10480 (CNQ48_10480) | yebB | 2068267..2068869 (-) | 603 | WP_001024937.1 | YebB family permuted papain-like enzyme | - |
| CNQ48_RS10485 (CNQ48_10485) | yobI | 2068940..2069005 (+) | 66 | WP_072093883.1 | stress response small protein YobI | - |
| CNQ48_RS10490 (CNQ48_10490) | ruvA | 2069144..2069755 (+) | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| CNQ48_RS10495 (CNQ48_10495) | ruvB | 2069764..2070774 (+) | 1011 | WP_000568521.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| CNQ48_RS10500 (CNQ48_10500) | znuB | 2070919..2071704 (-) | 786 | WP_000571471.1 | zinc ABC transporter permease subunit ZnuB | - |
| CNQ48_RS10505 (CNQ48_10505) | znuC | 2071701..2072456 (-) | 756 | WP_000202996.1 | zinc ABC transporter ATP-binding protein ZnuC | - |
| CNQ48_RS10510 (CNQ48_10510) | znuA | 2072535..2073467 (+) | 933 | WP_011076428.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| CNQ48_RS10515 (CNQ48_10515) | mepM | 2073483..2074805 (+) | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37185.87 Da Isoelectric Point: 4.8569
>NTDB_id=206797 CNQ48_RS10495 WP_000568521.1 2069764..2070774(+) (ruvB) [Escherichia coli strain 1190]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TVRAWKHFGITPPEMP
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TVRAWKHFGITPPEMP
Nucleotide
Download Length: 1011 bp
>NTDB_id=206797 CNQ48_RS10495 WP_000568521.1 2069764..2070774(+) (ruvB) [Escherichia coli strain 1190]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCCGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGTTGTTTATTGATGAGATCCACCGTCTATCGCCAGTTGTTGAAGAAGTGCTGTACCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACACTGATTGGCGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGACCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGCGCTCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGACTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCTGATATCGCTGCTCAGGCGCTGGATATGCTGAATGTCGATGCCGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCTGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGCGGGCGTATGGCG
ACAGTGCGGGCGTGGAAGCACTTCGGCATCACACCGCCAGAAATGCCGTAG
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCCGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGTTGTTTATTGATGAGATCCACCGTCTATCGCCAGTTGTTGAAGAAGTGCTGTACCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACACTGATTGGCGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGACCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGCGCTCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGACTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCTGATATCGCTGCTCAGGCGCTGGATATGCTGAATGTCGATGCCGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCTGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGCGGGCGTATGGCG
ACAGTGCGGGCGTGGAAGCACTTCGGCATCACACCGCCAGAAATGCCGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
60.486 |
97.917 |
0.592 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.934 |
94.94 |
0.56 |
| ruvB | Streptococcus pneumoniae R6 |
58.934 |
94.94 |
0.56 |
| ruvB | Streptococcus pneumoniae D39 |
58.934 |
94.94 |
0.56 |
| ruvB | Synechocystis sp. PCC 6803 |
52.941 |
96.131 |
0.509 |
| ruvB | Helicobacter pylori 26695 |
51.227 |
97.024 |
0.497 |