Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BSQ44_RS14675 Genome accession   NZ_CP018171
Coordinates   3009914..3010417 (-) Length   167 a.a.
NCBI ID   WP_072605452.1    Uniprot ID   -
Organism   Aquibium oceanicum strain B7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3004914..3015417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSQ44_RS14665 (BSQ44_14660) - 3006639..3008387 (+) 1749 WP_072605447.1 hydantoinase B/oxoprolinase family protein -
  BSQ44_RS14670 (BSQ44_14665) - 3008482..3009684 (-) 1203 WP_072605450.1 adenylate/guanylate cyclase domain-containing protein -
  BSQ44_RS14675 (BSQ44_14670) ssb 3009914..3010417 (-) 504 WP_072605452.1 single-stranded DNA-binding protein Machinery gene
  BSQ44_RS14680 (BSQ44_14675) - 3010667..3010939 (+) 273 WP_157894602.1 hypothetical protein -
  BSQ44_RS14685 (BSQ44_14680) - 3011063..3011473 (+) 411 WP_072605456.1 DUF1801 domain-containing protein -
  BSQ44_RS14690 (BSQ44_14685) - 3011478..3011834 (-) 357 WP_072605458.1 gamma-butyrobetaine hydroxylase-like domain-containing protein -
  BSQ44_RS14695 (BSQ44_14690) - 3011967..3012617 (+) 651 WP_072605460.1 L,D-transpeptidase -
  BSQ44_RS14700 (BSQ44_14695) - 3012624..3013148 (+) 525 WP_072605462.1 OmpA family protein -
  BSQ44_RS14705 (BSQ44_14700) lexA 3013451..3014161 (+) 711 WP_072605464.1 transcriptional repressor LexA -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18129.99 Da        Isoelectric Point: 5.3611

>NTDB_id=206611 BSQ44_RS14675 WP_072605452.1 3009914..3010417(-) (ssb) [Aquibium oceanicum strain B7]
MAGSVNKVILVGNLGADPEVRRLPSGDPIVNLSVATSETWRDKNSGERKEKTEWHRVVIFNDNLAKVAEQYLKKGMKVYV
EGSIQTRKWQDQSGQDRYSTEVVLQKFRGELQMLDARGQGEGQGGGYSGGRGSDFGSSGPMDDDRGRGGSSGGGGGFSRE
LDDEIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=206611 BSQ44_RS14675 WP_072605452.1 3009914..3010417(-) (ssb) [Aquibium oceanicum strain B7]
ATGGCAGGAAGCGTCAACAAGGTCATTCTGGTCGGCAACCTGGGCGCGGACCCCGAAGTCCGGCGCCTGCCGTCCGGCGA
TCCGATCGTGAATCTCAGCGTCGCGACGTCGGAAACCTGGCGCGACAAGAATTCCGGGGAGCGCAAGGAAAAGACCGAGT
GGCACCGGGTCGTCATCTTCAACGACAACCTCGCCAAGGTGGCCGAGCAGTACCTGAAGAAGGGCATGAAGGTCTACGTG
GAAGGATCGATCCAGACGCGCAAGTGGCAGGATCAGTCGGGCCAGGATCGCTACTCGACCGAGGTCGTGCTGCAGAAGTT
CCGCGGCGAGCTGCAGATGCTGGATGCACGCGGCCAGGGCGAAGGCCAGGGCGGCGGCTATTCCGGCGGTCGGGGCTCCG
ACTTCGGCTCTTCGGGACCGATGGATGACGATCGCGGGCGCGGCGGCAGCAGCGGCGGTGGCGGTGGTTTCTCGCGCGAA
CTGGACGACGAGATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.917

100

0.551
  ssb Vibrio cholerae strain A1552

52.023

100

0.539
  ssb Neisseria meningitidis MC58

39.444

100

0.425
  ssb Neisseria gonorrhoeae MS11

39.444

100

0.425

Multiple sequence alignment