Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SMA_0933 Genome accession   HE613569
Coordinates   924103..924783 (+) Length   226 a.a.
NCBI ID   CCF02224.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 919103..929783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_0928 - 920164..920779 (+) 616 Protein_927 Phosphoglycerate mutase family -
  SMA_0929 gpmB 920782..921405 (+) 624 CCF02220.1 Phosphoglycerate mutase family -
  SMA_0930 cobC 921398..921925 (+) 528 CCF02221.1 Phosphoglycerate mutase family -
  SMA_0931 - 922092..923210 (+) 1119 CCF02222.1 Permease -
  SMA_0932 - 923217..924056 (+) 840 CCF02223.1 UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase WaaW -
  SMA_0933 radC 924103..924783 (+) 681 CCF02224.1 DNA repair protein RadC Machinery gene
  SMA_0934 rex 924920..925567 (-) 648 CCF02225.1 Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) -
  SMA_0935 - 925713..926060 (-) 348 CCF02226.1 Hypothetical protein -
  SMA_0936 iscS1 926050..927177 (-) 1128 CCF02227.1 Cysteine desulfurase -
  SMA_0937 prs 927185..928156 (-) 972 CCF02228.1 Ribose-phosphate pyrophosphokinase -
  SMA_0938 - 928242..928811 (-) 570 CCF02229.1 Adenylate cyclase -
  SMA_0939 yjbM 928941..929609 (+) 669 CCF02230.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26022.17 Da        Isoelectric Point: 6.7534

>NTDB_id=20652 SMA_0933 CCF02224.1 924103..924783(+) (radC) [Streptococcus macedonicus ACA-DC 198]
MYAIEMKADAMLPRERLRDLGAEHLSNQELLSILLRTGTKTTPVLEVANQILKNLDSLADFPHLSLQELQQINGIGYVKS
IEIKAMIELAKRISKAEYIQKERIMSSERLARKMMLELSDQKQEHLVAIYLDTQNRIIEQRTIFIGSVRRSIAEPREILY
YACKNMATSVIIVHNHPSGSPEPSENDLQFTQKMKRACEDIGIICLDHIVIGKYQYYSFREETDVL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=20652 SMA_0933 CCF02224.1 924103..924783(+) (radC) [Streptococcus macedonicus ACA-DC 198]
ATGTATGCAATTGAAATGAAAGCAGATGCTATGTTGCCACGAGAACGCTTGAGAGATTTGGGGGCAGAGCACCTTAGCAA
TCAGGAACTATTATCTATTTTATTACGAACAGGAACAAAAACAACCCCAGTTTTGGAAGTTGCCAATCAAATCTTGAAAA
ATTTAGATAGCTTAGCTGATTTTCCACACCTATCCCTGCAAGAATTGCAACAAATCAATGGTATTGGCTATGTTAAATCA
ATTGAAATCAAAGCAATGATTGAACTAGCAAAGCGCATTAGCAAGGCTGAATATATCCAAAAAGAACGCATTATGAGCAG
CGAACGCCTAGCACGTAAAATGATGTTAGAATTGAGCGACCAAAAACAAGAGCACTTGGTAGCTATTTATCTGGATACGC
AAAATCGAATTATTGAACAACGAACGATTTTTATCGGTTCTGTTCGCCGTTCGATTGCTGAACCACGTGAAATTCTCTAT
TATGCATGCAAAAACATGGCAACATCAGTTATTATTGTCCATAATCATCCGTCGGGCTCCCCAGAGCCAAGCGAGAACGA
CCTGCAATTTACCCAAAAAATGAAACGCGCTTGTGAAGATATTGGTATTATTTGTCTTGACCATATCGTCATTGGAAAAT
ACCAATATTACAGCTTCCGAGAAGAAACAGATGTTTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(12-80)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

60.177

100

0.602
  radC Streptococcus pneumoniae TIGR4

59.292

100

0.593
  radC Streptococcus pneumoniae R6

58.85

100

0.589
  radC Streptococcus pneumoniae D39

58.85

100

0.589
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

46.19

92.92

0.429

Multiple sequence alignment