Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   SMA_0543 Genome accession   HE613569
Coordinates   550457..551107 (-) Length   216 a.a.
NCBI ID   CCF01834.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 545457..556107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_0538 trpC 545645..546412 (+) 768 CCF01829.1 Indole-3-glycerol phosphate synthase -
  SMA_0539 trpF 546399..546980 (+) 582 CCF01830.1 Phosphoribosylanthranilate isomerase -
  SMA_0540 trpB 546977..548179 (+) 1203 CCF01831.1 Tryptophan synthase beta chain -
  SMA_0541 trpA 548183..548965 (+) 783 CCF01832.1 Tryptophan synthase alpha chain -
  SMA_0542 mntH 549034..550374 (-) 1341 CCF01833.1 Manganese transport protein MntH -
  SMA_0543 cclA/cilC 550457..551107 (-) 651 CCF01834.1 Late competence protein ComC, processing protease Machinery gene
  SMA_0544 dps 551237..551767 (+) 531 CCF01835.1 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase -
  SMA_0545 - 551939..552148 (+) 210 CCF01836.1 Hypothetical protein -
  SMA_0546 glcK 552141..553109 (+) 969 CCF01837.1 Glucokinase -
  SMA_0547 yqhL 553120..553509 (+) 390 CCF01838.1 Rhodanese-like domain protein -
  SMA_0548 - 553524..554570 (+) 1047 CCF01839.1 Hypothetical protein -
  SMA_0549 agaR 554558..555151 (-) 594 CCF01840.1 Alpha-galactosidase -
  SMA_0550 aga 555323..555682 (-) 360 CCF01841.1 Alpha-galactosidase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24753.62 Da        Isoelectric Point: 5.5898

>NTDB_id=20631 SMA_0543 CCF01834.1 550457..551107(-) (cclA/cilC) [Streptococcus macedonicus ACA-DC 198]
MDILLFFFLGASIASFLSLIVDRFPEKSIIFPASHCDSCGQQLAVRDLIPIFSQLINHSRCRFCHTKISFWYGLLEIYFG
GIVVLYYCALLSLDQVFILFFSTTLSLYDLKRQEFPLLIWLLPSIFLLFVTPISALAIILLAFGIVAELIDLKIGSGDFF
YLASLSLLLDLQTILWIIELGSLSGIIYYFFQTNKRIPFVPFLFLGYLILFIFNYA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=20631 SMA_0543 CCF01834.1 550457..551107(-) (cclA/cilC) [Streptococcus macedonicus ACA-DC 198]
ATGGACATTTTATTATTCTTTTTTCTAGGGGCTTCTATTGCTTCTTTTCTTAGTTTAATCGTTGATCGATTTCCCGAAAA
ATCAATCATTTTTCCTGCCAGTCATTGTGATTCTTGTGGACAACAACTTGCCGTTCGTGATTTGATTCCCATTTTTTCTC
AACTGATAAATCATTCACGTTGTCGTTTTTGCCACACCAAAATTTCTTTCTGGTATGGGCTGTTAGAGATTTATTTTGGG
GGCATTGTCGTACTTTACTATTGCGCACTTCTCTCACTCGACCAAGTTTTTATCTTGTTTTTTAGCACAACTCTTAGTCT
TTATGACTTGAAACGTCAAGAGTTTCCATTATTGATTTGGCTCCTTCCAAGTATTTTTTTGCTTTTTGTCACGCCGATTA
GTGCGCTAGCTATTATTCTTTTGGCTTTTGGGATAGTGGCAGAGCTAATTGATTTGAAAATCGGTAGCGGTGATTTTTTC
TACCTTGCCAGTTTGAGTCTGCTTCTTGACCTTCAAACTATTTTATGGATTATCGAGCTTGGCTCTCTTTCAGGTATTAT
TTACTACTTTTTCCAGACAAATAAACGGATTCCCTTTGTGCCATTTTTATTTTTAGGATACCTAATTTTATTTATTTTTA
ACTACGCTTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

44.175

95.37

0.421
  cclA/cilC Streptococcus pneumoniae TIGR4

43.564

93.519

0.407
  cclA/cilC Streptococcus mitis NCTC 12261

42.718

95.37

0.407
  cclA/cilC Streptococcus pneumoniae Rx1

42.718

95.37

0.407
  cclA/cilC Streptococcus pneumoniae D39

42.718

95.37

0.407
  cclA/cilC Streptococcus pneumoniae R6

42.718

95.37

0.407

Multiple sequence alignment