Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   BOC71_RS08685 Genome accession   NZ_CP018137
Coordinates   1601767..1602426 (+) Length   219 a.a.
NCBI ID   WP_000565017.1    Uniprot ID   A0A0E8GKN8
Organism   Streptococcus pneumoniae strain SP61     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1596767..1607426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BOC71_RS08645 (BOC71_01623) mgaSpn 1596923..1598404 (-) 1482 WP_001205280.1 virulence factor transcriptional regulator MgaSpn -
  BOC71_RS08650 (BOC71_01624) - 1598847..1599011 (+) 165 WP_001809002.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  BOC71_RS08655 (BOC71_01625) amaP 1599095..1599661 (+) 567 WP_000030213.1 alkaline shock response membrane anchor protein AmaP -
  BOC71_RS08660 (BOC71_01626) - 1599673..1599843 (+) 171 WP_000455066.1 DUF2273 domain-containing protein -
  BOC71_RS08665 (BOC71_01627) - 1599882..1600490 (+) 609 WP_000064115.1 Asp23/Gls24 family envelope stress response protein -
  BOC71_RS08670 (BOC71_01628) - 1600521..1600724 (+) 204 WP_000109957.1 CsbD family protein -
  BOC71_RS08675 - 1600834..1601073 (-) 240 WP_001005783.1 transposase -
  BOC71_RS08680 (BOC71_01629) - 1601251..1601697 (-) 447 WP_000155421.1 GNAT family N-acetyltransferase -
  BOC71_RS08685 (BOC71_01630) cclA/cilC 1601767..1602426 (+) 660 WP_000565017.1 prepilin peptidase Machinery gene
  BOC71_RS08690 (BOC71_01631) - 1602478..1603629 (-) 1152 WP_000481747.1 helix-turn-helix domain-containing protein -
  BOC71_RS08695 (BOC71_01632) - 1603644..1604375 (-) 732 WP_000934017.1 hypothetical protein -
  BOC71_RS08700 - 1604595..1604705 (+) 111 Protein_1604 prepilin peptidase -
  BOC71_RS08705 (BOC71_01633) trpA 1604677..1605453 (-) 777 WP_001127048.1 tryptophan synthase subunit alpha -
  BOC71_RS08710 (BOC71_01634) trpB 1605446..1606669 (-) 1224 WP_000331287.1 tryptophan synthase subunit beta -
  BOC71_RS08715 (BOC71_01635) - 1606647..1607246 (-) 600 WP_000169885.1 phosphoribosylanthranilate isomerase -

Sequence


Protein


Download         Length: 219 a.a.        Molecular weight: 24879.99 Da        Isoelectric Point: 7.6418

>NTDB_id=206148 BOC71_RS08685 WP_000565017.1 1601767..1602426(+) (cclA/cilC) [Streptococcus pneumoniae strain SP61]
MIDFYFFLVGSILASFLGLVIDRFPEQSIISSASHCDSCQTRLRPLDLIPILSQVFNRFRCRYCKVRYPVWYALFELVLG
LLFLLYSWELLSLGQVVLITAGLTLGIYDFHHQEYPLLVWMTFHLILIASSGWNLVMVSFLALGILAHFIDIRMGAGDFL
FLASCALVFSVTELLILIQFASATGILAFILQKKKERLPFVPFLLLATCLIIFGKLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=206148 BOC71_RS08685 WP_000565017.1 1601767..1602426(+) (cclA/cilC) [Streptococcus pneumoniae strain SP61]
ATGATTGATTTTTATTTTTTTCTCGTCGGGAGCATTCTCGCTTCCTTTCTTGGTTTGGTCATTGACCGTTTTCCAGAGCA
ATCCATTATCAGTTCAGCCAGTCACTGCGATTCCTGTCAGACTCGCTTGCGTCCCTTAGATTTGATTCCGATTCTCTCAC
AGGTCTTCAATCGCTTTCGCTGTCGCTACTGCAAAGTTCGCTATCCTGTCTGGTATGCCCTCTTTGAATTAGTCTTAGGA
CTCCTCTTTCTGCTTTACTCTTGGGAATTGCTTTCCTTGGGGCAAGTCGTCCTAATCACCGCTGGTTTGACCTTGGGTAT
CTACGACTTTCACCATCAGGAATATCCCTTACTGGTCTGGATGACTTTCCACCTAATCCTAATAGCTTCCTCTGGCTGGA
ATCTGGTCATGGTCTCCTTCCTTGCTCTTGGAATTTTGGCTCATTTTATCGATATCCGCATGGGCGCAGGAGATTTCCTC
TTTTTAGCTTCTTGTGCTCTCGTCTTTAGCGTAACGGAGTTACTGATCTTGATTCAGTTTGCTTCTGCGACGGGTATCCT
GGCCTTTATCCTGCAAAAGAAAAAGGAAAGACTTCCTTTCGTGCCTTTCCTCTTACTTGCTACTTGTTTGATTATTTTTG
GTAAGCTACTGCTTGTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0E8GKN8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae TIGR4

96.804

100

0.968

  cclA/cilC Streptococcus pneumoniae Rx1

95.89

100

0.959

  cclA/cilC Streptococcus pneumoniae D39

95.89

100

0.959

  cclA/cilC Streptococcus pneumoniae R6

95.89

100

0.959

  cclA/cilC Streptococcus mitis SK321

92.237

100

0.922

  cclA/cilC Streptococcus mitis NCTC 12261

85.845

100

0.858


Multiple sequence alignment