Detailed information NTG0205985

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CJU64_RS16220
• Genome accession: NZ_CP023346
• Coordinates: 3108411..3109403 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ETEC-2265
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3103411..3114403

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CJU64_RS16195 (CJU64_16195)	ygbN	3104066..3105430 (+)	1365	WP_000104439.1	GntP family transporter	-
CJU64_RS16200 (CJU64_16200)	-	3105469..3105705 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CJU64_RS16205 (CJU64_16205)	-	3105716..3107143 (-)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CJU64_RS16210 (CJU64_16210)	-	3107143..3107736 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CJU64_RS16215 (CJU64_16215)	-	3107883..3108290 (+)	408	WP_001208072.1	MarR family transcriptional regulator	-
CJU64_RS16220 (CJU64_16220)	rpoS	3108411..3109403 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CJU64_RS16225 (CJU64_16225)	nlpD	3109466..3110560 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CJU64_RS16230 (CJU64_16230)	pcm	3110745..3111371 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CJU64_RS16235 (CJU64_16235)	surE	3111365..3112126 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CJU64_RS16240 (CJU64_16240)	truD	3112107..3113156 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CJU64_RS16245 (CJU64_16245)	ispF	3113153..3113632 (-)	480	WP_001219251.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CJU64_RS16250 (CJU64_16250)	ispD	3113632..3114342 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=205985 CJU64_RS16220 WP_000081550.1 3108411..3109403(-) (rpoS) [Escherichia coli strain ETEC-2265]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=205985 CJU64_RS16220 WP_000081550.1 3108411..3109403(-) (rpoS) [Escherichia coli strain ETEC-2265]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715