Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CJU64_RS17705 Genome accession   NZ_CP023346
Coordinates   3403809..3404285 (+) Length   158 a.a.
NCBI ID   WP_001502867.1    Uniprot ID   -
Organism   Escherichia coli strain ETEC-2265     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3398809..3409285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJU64_RS17675 (CJU64_17675) tnpA 3399522..3400199 (+) 678 WP_001711999.1 IS66-like element accessory protein TnpA -
  CJU64_RS17680 (CJU64_17680) tnpB 3400199..3400546 (+) 348 WP_000624622.1 IS66 family insertion sequence element accessory protein TnpB -
  CJU64_RS17685 (CJU64_17685) - 3400566..3402137 (+) 1572 WP_000381395.1 IS66-like element ISCro1 family transposase -
  CJU64_RS17690 (CJU64_17690) - 3402152..3402982 (+) 831 WP_024172271.1 DUF932 domain-containing protein -
  CJU64_RS17695 (CJU64_17695) - 3402982..3403251 (+) 270 WP_001183319.1 hypothetical protein -
  CJU64_RS17700 (CJU64_17700) - 3403320..3403793 (+) 474 WP_001355870.1 antirestriction protein -
  CJU64_RS17705 (CJU64_17705) radC 3403809..3404285 (+) 477 WP_001502867.1 RadC family protein Machinery gene
  CJU64_RS17710 (CJU64_17710) - 3404348..3404569 (+) 222 WP_000692327.1 DUF987 domain-containing protein -
  CJU64_RS17715 (CJU64_17715) - 3404588..3405232 (+) 645 WP_000086771.1 hypothetical protein -
  CJU64_RS17720 (CJU64_17720) - 3405282..3405656 (+) 375 WP_032190265.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CJU64_RS17725 (CJU64_17725) - 3405703..3406080 (+) 378 WP_000854733.1 TA system toxin CbtA family protein -
  CJU64_RS17730 (CJU64_17730) - 3406077..3406565 (+) 489 WP_000761663.1 DUF5983 family protein -
  CJU64_RS17735 (CJU64_17735) - 3406577..3406774 (+) 198 WP_000839243.1 DUF957 domain-containing protein -
  CJU64_RS28720 - 3406863..3407711 (+) 849 Protein_3283 DUF4942 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17632.27 Da        Isoelectric Point: 7.2020

>NTDB_id=205989 CJU64_RS17705 WP_001502867.1 3403809..3404285(+) (radC) [Escherichia coli strain ETEC-2265]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEATPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=205989 CJU64_RS17705 WP_001502867.1 3403809..3404285(+) (radC) [Escherichia coli strain ETEC-2265]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTACCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGTACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGCCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTTGGTGGTAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment