Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BMJ37_RS12185 Genome accession   NZ_CP018133
Coordinates   2510897..2511232 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain ATR2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2505897..2516232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMJ37_RS12165 (BMJ37_11760) gcvT 2506503..2507603 (-) 1101 WP_029973877.1 glycine cleavage system aminomethyltransferase GcvT -
  BMJ37_RS12170 (BMJ37_11765) - 2508027..2509697 (+) 1671 WP_021494309.1 DEAD/DEAH box helicase -
  BMJ37_RS12175 (BMJ37_11770) - 2509719..2510513 (+) 795 WP_014418368.1 YqhG family protein -
  BMJ37_RS12180 (BMJ37_11775) sinI 2510690..2510863 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  BMJ37_RS12185 (BMJ37_11780) sinR 2510897..2511232 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BMJ37_RS12190 (BMJ37_11785) tasA 2511280..2512065 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  BMJ37_RS12195 (BMJ37_11790) sipW 2512130..2512714 (-) 585 WP_012117977.1 signal peptidase I SipW -
  BMJ37_RS12200 (BMJ37_11795) tapA 2512686..2513357 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  BMJ37_RS12205 (BMJ37_11800) - 2513616..2513945 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  BMJ37_RS12210 (BMJ37_11805) - 2513986..2514165 (-) 180 WP_003153093.1 YqzE family protein -
  BMJ37_RS12215 (BMJ37_11810) comGG 2514222..2514599 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  BMJ37_RS12220 (BMJ37_11815) comGF 2514600..2514995 (-) 396 WP_050569584.1 competence type IV pilus minor pilin ComGF -
  BMJ37_RS12225 (BMJ37_11820) comGE 2515009..2515323 (-) 315 WP_029973875.1 competence type IV pilus minor pilin ComGE Machinery gene
  BMJ37_RS12230 (BMJ37_11825) comGD 2515307..2515744 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  BMJ37_RS12235 (BMJ37_11830) comGC 2515734..2516042 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=205984 BMJ37_RS12185 WP_003153104.1 2510897..2511232(+) (sinR) [Bacillus velezensis strain ATR2]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=205984 BMJ37_RS12185 WP_003153104.1 2510897..2511232(+) (sinR) [Bacillus velezensis strain ATR2]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment