Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   XF_RS05865 Genome accession   NC_002488
Coordinates   1346189..1346683 (+) Length   164 a.a.
NCBI ID   WP_004083791.1    Uniprot ID   Q9PDI7
Organism   Xylella fastidiosa 9a5c     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1341189..1351683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XF_RS05850 (XF1389) cyoB 1341528..1343525 (-) 1998 WP_031337912.1 cytochrome o ubiquinol oxidase subunit I -
  XF_RS05855 (XF1390) cyoA 1343519..1344478 (-) 960 WP_010893894.1 ubiquinol oxidase subunit II -
  XF_RS05860 (XF1391) - 1344942..1345940 (-) 999 WP_010893895.1 polyprenyl synthetase family protein -
  XF_RS05865 (XF1392) ssb 1346189..1346683 (+) 495 WP_004083791.1 single-stranded DNA-binding protein Machinery gene
  XF_RS05870 (XF1397) - 1348297..1349208 (+) 912 WP_010893900.1 class I SAM-dependent methyltransferase -
  XF_RS05875 (XF1398) - 1349519..1350715 (+) 1197 WP_229716589.1 cation:proton antiporter -
  XF_RS05880 (XF1399) gloA 1350892..1351419 (-) 528 WP_010893902.1 lactoylglutathione lyase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18211.20 Da        Isoelectric Point: 5.9575

>NTDB_id=20586 XF_RS05865 WP_004083791.1 1346189..1346683(+) (ssb) [Xylella fastidiosa 9a5c]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQARQPSQSPQSSPPPMDDFADD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=20586 XF_RS05865 WP_004083791.1 1346189..1346683(+) (ssb) [Xylella fastidiosa 9a5c]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAACCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTGCGTAAGGACAAGGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATCCGCTATGACAAGTTCACTGGCCAGGATGGTCAGGAGCGCTATGTTACCGAGATCGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGCGATGGCGGTGGTATGGGCGGGGGCGGTGAGCGCCCGCAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGGCTCGGCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PDI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

100

0.53
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.5
  ssb Neisseria meningitidis MC58

41.618

100

0.439
  ssb Neisseria gonorrhoeae MS11

41.04

100

0.433

Multiple sequence alignment