Detailed information NTG0205815

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BO996_RS25965
• Genome accession: NZ_CP018101
• Coordinates: 5806325..5807212 (+)
• Length: 295 a.a.
• NCBI ID: WP_071956731.1
• Uniprot ID: -
• Organism: Delftia sp. HK171
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5801325..5812212

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BO996_RS25935 (BO996_25540)	rpmA	5801342..5801599 (-)	258	WP_012207283.1	50S ribosomal protein L27	-
BO996_RS25940 (BO996_25545)	rplU	5801615..5801926 (-)	312	WP_012207284.1	50S ribosomal protein L21	-
BO996_RS25945 (BO996_25550)	-	5802157..5803086 (+)	930	WP_034396917.1	polyprenyl synthetase family protein	-
BO996_RS25955 (BO996_25560)	pilB	5803327..5805069 (+)	1743	WP_071956729.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BO996_RS25960 (BO996_25565)	pilC	5805108..5806325 (+)	1218	WP_071956730.1	type II secretion system F family protein	Machinery gene
BO996_RS25965 (BO996_25570)	pilD	5806325..5807212 (+)	888	WP_071956731.1	A24 family peptidase	Machinery gene
BO996_RS25970 (BO996_25575)	coaE	5807227..5807871 (+)	645	WP_071956732.1	dephospho-CoA kinase	-
BO996_RS25975 (BO996_25580)	zapD	5807961..5808716 (+)	756	WP_012207290.1	cell division protein ZapD	-
BO996_RS25980 (BO996_25585)	-	5808734..5808970 (+)	237	WP_156898007.1	DNA gyrase inhibitor YacG	-
BO996_RS25985 (BO996_25590)	-	5808981..5809499 (-)	519	WP_065345741.1	NUDIX domain-containing protein	-
BO996_RS25990 (BO996_25595)	-	5809550..5810506 (-)	957	WP_071956733.1	ATP-binding protein	-
BO996_RS25995 (BO996_25600)	argJ	5810672..5811904 (-)	1233	WP_043822311.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 295 a.a.
• Molecular weight: 31746.34 Da
• Isoelectric Point: 6.6134

>NTDB_id=205815 BO996_RS25965 WP_071956731.1 5806325..5807212(+) (pilD) [Delftia sp. HK171]
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSGAVPPSAAATDPAEAPLSLSRPRSRCPHCG
HAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCTMQWGITPTGAAWCLFSAALLSLALIDWDTTLLP
DDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLVTGKEGMGYGDFKLFAALGAWFGWQALVPIILL
SSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAAIGL

Nucleotide

• Length: 888 bp

>NTDB_id=205815 BO996_RS25965 WP_071956731.1 5806325..5807212(+) (pilD) [Delftia sp. HK171]
ATGGTTTTGGAACTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTCGGCAGCTTTCTCAACGTGGTGGT
GCACAGGCTGCCACGCATGATGGAACAGCAATGGAACGCGGAATGCGCCCAATGGGCACAGGAGCAGTCCGGTGCTGTAC
CTCCCTCTGCTGCTGCGACTGACCCTGCCGAGGCTCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCATTGCGGC
CATGCCATCCATTGGTACGAGAACATTCCCGTGCTCAGCTATCTGGCACTGCGGGGCCGGTGCTCGGAATGCAAGGCATC
GATCAGCATCCGCTACCCGCTGGTGGAACTGGCCTGCGCTGCGCTATTCGCCTACTGCACGATGCAATGGGGCATCACGC
CCACAGGCGCTGCCTGGTGCCTTTTCAGTGCAGCCTTGCTGAGCCTGGCATTGATCGACTGGGATACCACACTGCTCCCC
GATGACATCACCCTGCCCTTGCTGTGGGCCGGGCTGCTTTCATCGGCACTGCACTGGACCGCCGTGCCTCTGGCCGACGC
GGTCTGGGGTGCCGCAGCGGGCTATCTCTCGCTATGGCTGGTCTACTGGGCCTTCAAGCTGGTCACCGGCAAGGAAGGCA
TGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGGGCCTGGTTCGGCTGGCAGGCTCTTGTGCCCATCATCCTGCTC
TCGTCCGTGATTGGCGCCATCGTGGGCATTGCGCTGAAGATCAACAGCCGCCTGCGCGAAGGTGGCTATGTTCCCTTTGG
CCCCTTTCTTGCGGGCGCCGGCTTTGCCGCCATGGTGTTCGGACCCCAGCAGATGCTGCAATCCCTGTTGGCGGCCATCG
GTCTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (141-250)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.957	95.254	0.495
pilD	Vibrio campbellii strain DS40M4	47.67	94.576	0.451
pilD	Acinetobacter nosocomialis M2	45.788	92.542	0.424
pilD	Acinetobacter baumannii D1279779	45.421	92.542	0.42
pilD	Neisseria gonorrhoeae MS11	46.212	89.492	0.414