Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BO996_RS04205 Genome accession   NZ_CP018101
Coordinates   922220..922783 (-) Length   187 a.a.
NCBI ID   WP_071954098.1    Uniprot ID   -
Organism   Delftia sp. HK171     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 917220..927783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BO996_RS04180 (BO996_04130) paaE 917321..918424 (+) 1104 WP_071954093.1 1,2-phenylacetyl-CoA epoxidase subunit PaaE -
  BO996_RS04185 (BO996_04135) - 918458..919150 (-) 693 WP_071954094.1 hypothetical protein -
  BO996_RS29585 - 919153..919461 (-) 309 WP_225614104.1 hypothetical protein -
  BO996_RS04195 (BO996_04145) - 919858..921381 (-) 1524 WP_071954096.1 SulP family inorganic anion transporter -
  BO996_RS04200 (BO996_04150) - 921636..922133 (-) 498 WP_071954097.1 hypothetical protein -
  BO996_RS04205 (BO996_04155) ssb 922220..922783 (-) 564 WP_071954098.1 single-stranded DNA-binding protein Machinery gene
  BO996_RS04210 (BO996_04160) - 922944..924119 (-) 1176 WP_071954099.1 MFS transporter -
  BO996_RS04215 (BO996_04165) uvrA 924393..927506 (+) 3114 WP_071954100.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20349.46 Da        Isoelectric Point: 5.9554

>NTDB_id=205799 BO996_RS04205 WP_071954098.1 922220..922783(-) (ssb) [Delftia sp. HK171]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADSMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQQQRRPAPMAAPAPRQAPAQ
RPAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=205799 BO996_RS04205 WP_071954098.1 922220..922783(-) (ssb) [Delftia sp. HK171]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAACCTCGGACGCGACCCCGAAATGCGCACCTTCCCGAGTGGCGATCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCTGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGGCCAGCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGACAGCATGCA
GATGCTGGGCAGCCGCCAGGGCGGCGGCGGTGGCCAGCAAGGCGGCGGCTACGGCGATGAAGGCTACGGCGACAGCGGCT
ACGACGCCCCTCCCCAGCAGCAGCAACAGCGCCGCCCGGCCCCCATGGCAGCACCCGCACCGCGCCAGGCCCCTGCCCAG
CGCCCCGCTCCTGCGCCCATGGCACCCCCGCCGCAGCGCGCAGCCTCGGGCTTTGACGACATGGATGACGACATTCCGTT
CTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.284

100

0.551
  ssb Glaesserella parasuis strain SC1401

52.332

100

0.54
  ssb Neisseria gonorrhoeae MS11

46.809

100

0.471
  ssb Neisseria meningitidis MC58

45.745

100

0.46

Multiple sequence alignment