Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   Cj1475c Genome accession   NC_002163
Coordinates   1409278..1409595 (-) Length   105 a.a.
NCBI ID   YP_002344855.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1404278..1414595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cj1471c ctsE 1405147..1406706 (-) 1560 YP_002344851.1 type II protein secretion system protein E Machinery gene
  Cj1472c ctsX 1406696..1407283 (-) 588 YP_002344852.1 membrane protein Machinery gene
  Cj1473c ctsP 1407287..1407895 (-) 609 YP_002344853.1 ATP/GTP-binding protein Machinery gene
  Cj1474c ctsD 1407888..1409306 (-) 1419 YP_002344854.1 type II protein secretion system protein D Machinery gene
  Cj1475c ctsR 1409278..1409595 (-) 318 YP_002344855.1 hypothetical protein Machinery gene
  Cj1476c - 1409619..1413179 (-) 3561 YP_002344856.1 pyruvate-flavodoxin oxidoreductase -
  Cj1477c - 1413272..1413913 (-) 642 YP_002344857.1 hydrolase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=20574 Cj1475c YP_002344855.1 1409278..1409595(-) (ctsR) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=20574 Cj1475c YP_002344855.1 1409278..1409595(-) (ctsR) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981

Multiple sequence alignment