Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrQ   Type   Regulator
Locus tag   DN94_05905 Genome accession   CP007565
Coordinates   1137701..1139470 (-) Length   589 a.a.
NCBI ID   AHX75205.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 1132701..1144470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_05890 rcrR 1134482..1134928 (-) 447 AHX75203.1 MarR family transcriptional regulator Regulator
  DN94_05895 - 1135191..1136231 (+) 1041 AHX75204.1 hypothetical protein -
  DN94_05905 rcrQ 1137701..1139470 (-) 1770 AHX75205.1 multidrug ABC transporter ATPase Regulator
  DN94_05910 rcrP 1139475..1141214 (-) 1740 AHX75206.1 multidrug ABC transporter ATP-binding protein Regulator
  DN94_05920 - 1141752..1143620 (-) 1869 AHX75207.1 antibiotic ABC transporter ATP-binding protein -

Sequence


Protein


Download         Length: 589 a.a.        Molecular weight: 66184.64 Da        Isoelectric Point: 6.4414

>NTDB_id=20570 DN94_05905 AHX75205.1 1137701..1139470(-) (rcrQ) [Streptococcus agalactiae strain 138spar]
MRKKSVFLRLWSYLTRYKATLFLAIFLKVLSSFMSVLEPFILGLAITELTANLVDMAKGVSGAELNVPYIAGILIIYFFR
GVFYELGSYGSNYFMTTVVQKSIRDIRHDLNRKINKVPVSYFDKHQFGDMLGRFTSDVETVSNALQQSFLQIINAFLSII
LVVVMVLYLNVPLAMIIIACIPVTYFSAQAILKRSQPYFKEQAKILGELNGFVQEKLTGFNIIKLYGREEASSQEFRDIT
DNLRHVGFKASFISGIMMPVLNGISDFIYLIIAFVGGLQVIAGTLTIGNMQAFVQYVWQISQPVQTITQLAGVLQSAKSS
LERIFEVLDEEEEANQVTEKLSHDLTGQVSFHGVDFHYSPDKPLIRDFNLDVEPGQMIAIVGPTGAGKTTLINLLMRFYD
VSEGAITVDGHDIRHLSRQDFRQQFGMVLQDAWLYEGTIKENLRFGNLEASDEDIVAAAKAANVDHFIRTLPGGYNMVMN
QESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKKLMEGRTSFVIAHRLSTIQEADNILVLKDGQ
IIEQGNHQKLLADKGFYYELYNSQFSNSK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=20570 DN94_05905 AHX75205.1 1137701..1139470(-) (rcrQ) [Streptococcus agalactiae strain 138spar]
ATGAGAAAAAAATCTGTTTTTTTGAGATTATGGTCTTATCTAACTCGCTACAAAGCTACTCTTTTCTTAGCGATTTTTTT
GAAAGTTTTATCTAGTTTTATGAGTGTTCTGGAGCCTTTTATTTTAGGGTTGGCGATAACAGAGTTGACTGCTAACCTTG
TTGATATGGCTAAGGGAGTTTCTGGGGCAGAATTGAACGTTCCTTATATTGCTGGTATTTTGATTATTTATTTTTTCAGA
GGTGTTTTCTATGAATTAGGTTCTTATGGCTCAAATTATTTTATGACTACTGTCGTTCAAAAAAGTATCCGTGATATCCG
TCATGATTTGAATCGTAAAATCAATAAAGTTCCTGTATCGTATTTTGATAAGCACCAATTTGGAGATATGTTGGGACGTT
TTACAAGTGATGTTGAAACGGTCTCAAATGCTTTACAACAGAGCTTTTTACAAATTATCAATGCTTTTTTAAGTATTATT
CTAGTAGTCGTTATGGTACTTTATCTAAATGTACCATTAGCCATGATTATCATTGCTTGTATTCCTGTAACTTATTTTAG
TGCACAAGCGATACTAAAAAGATCCCAACCTTACTTTAAAGAACAGGCAAAGATTCTGGGAGAACTGAATGGTTTTGTAC
AAGAGAAATTAACTGGTTTCAATATCATAAAATTATATGGTAGAGAAGAGGCGTCTAGTCAAGAATTTCGTGATATAACG
GATAATCTACGTCATGTAGGTTTCAAAGCTAGCTTCATTTCAGGAATTATGATGCCAGTATTGAATGGTATCTCTGATTT
TATTTACCTTATCATTGCATTTGTTGGCGGTTTGCAAGTTATTGCTGGTACCTTAACAATTGGTAACATGCAGGCGTTTG
TGCAGTATGTTTGGCAAATTAGTCAACCCGTTCAAACCATTACACAATTAGCAGGTGTTTTGCAAAGTGCAAAATCTTCC
TTAGAACGTATTTTTGAAGTCTTAGATGAAGAAGAGGAAGCCAATCAAGTCACTGAAAAATTGAGCCATGACTTAACCGG
TCAAGTCAGCTTTCATGGTGTCGATTTTCACTATTCTCCGGATAAGCCACTTATCCGAGACTTTAACTTAGATGTAGAAC
CAGGGCAAATGATTGCAATTGTAGGGCCAACAGGTGCAGGTAAGACAACACTTATAAACTTACTCATGAGATTCTACGAT
GTTAGTGAAGGTGCTATCACCGTAGATGGTCACGATATTAGACACCTGTCACGCCAAGATTTCCGCCAACAATTTGGCAT
GGTGTTGCAAGATGCTTGGTTATATGAAGGTACAATAAAAGAAAATCTTAGATTCGGTAATCTTGAAGCCAGTGATGAGG
ATATAGTTGCTGCTGCTAAAGCTGCGAATGTTGACCACTTTATTCGAACGTTACCTGGTGGCTACAATATGGTGATGAAT
CAAGAATCAAGCAATATCTCCTTAGGACAAAAGCAACTGTTGACTATTGCACGTGCTTTATTAGCAGATCCTAAAATTTT
AATTTTAGATGAAGCGACTTCATCTGTTGATACAAGGTTGGAATTGCTTATTCAAAAAGCTATGAAAAAATTGATGGAAG
GAAGAACTAGTTTTGTCATTGCACACCGTCTATCAACGATTCAAGAGGCAGACAACATTTTAGTTCTAAAGGATGGTCAA
ATCATCGAACAAGGTAATCACCAGAAACTCCTAGCAGATAAAGGATTTTATTACGAATTATATAATAGCCAATTTTCAAA
TAGTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

45.331

100

0.453


Multiple sequence alignment