Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DN94_05890 Genome accession   CP007565
Coordinates   1134482..1134928 (-) Length   148 a.a.
NCBI ID   AHX75203.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1129482..1139928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_05870 - 1130399..1131085 (-) 687 AHX75201.1 transcriptional regulator -
  DN94_05875 - 1131087..1131713 (-) 627 AHX75202.1 GTP pyrophosphokinase -
  DN94_05890 rcrR 1134482..1134928 (-) 447 AHX75203.1 MarR family transcriptional regulator Regulator
  DN94_05895 - 1135191..1136231 (+) 1041 AHX75204.1 hypothetical protein -
  DN94_05905 rcrQ 1137701..1139470 (-) 1770 AHX75205.1 multidrug ABC transporter ATPase Regulator

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17210.18 Da        Isoelectric Point: 9.9532

>NTDB_id=20569 DN94_05890 AHX75203.1 1134482..1134928(-) (rcrR) [Streptococcus agalactiae strain 138spar]
MIKENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGF
IAIVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 447 bp        

>NTDB_id=20569 DN94_05890 AHX75203.1 1134482..1134928(-) (rcrR) [Streptococcus agalactiae strain 138spar]
ATTATTAAGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGA
GTATGATGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTA
TAAAAGATGCTGAAGAAATTTTACACATTTCTAAGTCTGTAGCTTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTT
ATTGCGATTGTTCCATCTAAGACAGATAAGCGTGTGAAATATCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACA
ATTTGAAATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGG
TTATTAGAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(35-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.066

92.568

0.399

Multiple sequence alignment