Detailed information NTG0020573

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: Cj1474c
• Genome accession: NC_002163
• Coordinates: 1407888..1409306 (-)
• Length: 472 a.a.
• NCBI ID: YP_002344854.1
• Uniprot ID: Q0P8E3
• Organism: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1402888..1414306

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Cj1468	-	1403213..1403977 (+)	765	YP_002344850.1	integral membrane protein	-
Cj1471c	ctsE	1405147..1406706 (-)	1560	YP_002344851.1	type II protein secretion system protein E	Machinery gene
Cj1472c	ctsX	1406696..1407283 (-)	588	YP_002344852.1	membrane protein	Machinery gene
Cj1473c	ctsP	1407287..1407895 (-)	609	YP_002344853.1	ATP/GTP-binding protein	Machinery gene
Cj1474c	ctsD	1407888..1409306 (-)	1419	YP_002344854.1	type II protein secretion system protein D	Machinery gene
Cj1475c	ctsR	1409278..1409595 (-)	318	YP_002344855.1	hypothetical protein	Machinery gene
Cj1476c	-	1409619..1413179 (-)	3561	YP_002344856.1	pyruvate-flavodoxin oxidoreductase	-
Cj1477c	-	1413272..1413913 (-)	642	YP_002344857.1	hydrolase	-

Sequence

Protein

• Length: 472 a.a.
• Molecular weight: 53281.89 Da
• Isoelectric Point: 6.6184

>NTDB_id=20573 Cj1474c YP_002344854.1 1407888..1409306(-) (ctsD) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
MIRLILILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEI
FNFFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQN
IEKEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQN
FNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKES
SKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide

• Length: 1419 bp

>NTDB_id=20573 Cj1474c YP_002344854.1 1407888..1409306(-) (ctsD) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
ATGATAAGATTAATATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTT
TGATATCAGTATTAACGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTCAGTATTATTG
TTAAAGATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTGGACGAAATT
TTTAATTTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAA
GATTTTTAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGC
AAAGTGAATATAGCGGTAGTTTTGATGATGCAGAAGACAACATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAAT
ATAGAAAAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGC
AGGTCTTATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTA
AAAAACAAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAAT
TTTAATATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAA
TTTGGGTTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTA
ATCCAAAGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGT
TCTAAAGGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATAT
CTTGCCTGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATA
ATAAACGACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAAT
AATCAAACTTTAATTTTAGGCGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAAT
TCCAATCCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATCGTTTTTATTATCACTCCAAGTA
TAGTAGATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (283-456)

3D structure

• AlphaFold DB: Q0P8E3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	99.153	100	0.992