Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   Cj1473c Genome accession   NC_002163
Coordinates   1407287..1407895 (-) Length   202 a.a.
NCBI ID   YP_002344853.1    Uniprot ID   Q0P8E4
Organism   Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1402287..1412895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cj1467 - 1402445..1403209 (+) 765 YP_002344849.1 hypothetical protein -
  Cj1468 - 1403213..1403977 (+) 765 YP_002344850.1 integral membrane protein -
  Cj1471c ctsE 1405147..1406706 (-) 1560 YP_002344851.1 type II protein secretion system protein E Machinery gene
  Cj1472c ctsX 1406696..1407283 (-) 588 YP_002344852.1 membrane protein Machinery gene
  Cj1473c ctsP 1407287..1407895 (-) 609 YP_002344853.1 ATP/GTP-binding protein Machinery gene
  Cj1474c ctsD 1407888..1409306 (-) 1419 YP_002344854.1 type II protein secretion system protein D Machinery gene
  Cj1475c ctsR 1409278..1409595 (-) 318 YP_002344855.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=20572 Cj1473c YP_002344853.1 1407287..1407895(-) (ctsP) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=20572 Cj1473c YP_002344853.1 1407287..1407895(-) (ctsP) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995

Multiple sequence alignment