Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BOQ54_RS10390 Genome accession   NZ_CP018095
Coordinates   2192952..2193455 (-) Length   167 a.a.
NCBI ID   WP_055458144.1    Uniprot ID   -
Organism   Chelatococcus daeguensis strain TAD1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2187952..2198455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BOQ54_RS10370 (BOQ54_10285) - 2188061..2188903 (-) 843 WP_055458148.1 TIGR02587 family membrane protein -
  BOQ54_RS10375 (BOQ54_10290) - 2189096..2190106 (-) 1011 WP_071923851.1 zinc-binding alcohol dehydrogenase family protein -
  BOQ54_RS20370 (BOQ54_10295) - 2190181..2191575 (-) 1395 WP_071923852.1 globin-coupled sensor protein -
  BOQ54_RS10385 (BOQ54_10300) - 2191739..2192866 (-) 1128 WP_071923853.1 M20 family metallopeptidase -
  BOQ54_RS10390 (BOQ54_10305) ssb 2192952..2193455 (-) 504 WP_055458144.1 single-stranded DNA-binding protein Machinery gene
  BOQ54_RS10395 (BOQ54_10310) uvrA 2193871..2196795 (+) 2925 WP_071923854.1 excinuclease ABC subunit UvrA -
  BOQ54_RS10400 - 2197006..2197161 (+) 156 WP_019401899.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18225.22 Da        Isoelectric Point: 5.9952

>NTDB_id=205719 BOQ54_RS10390 WP_055458144.1 2192952..2193455(-) (ssb) [Chelatococcus daeguensis strain TAD1]
MAGSVNKVILIGNLGRDPEVRTFQNGNRVCNLRIATSETWRDKTSGERREKTEWHTVVIFNENLLRVAEQYLKKGSKVYI
EGQLETRKATDASGGERYFTEVVLRPFRGELTILDSRGGGGEMGEDGGGFGGSRGSDFGRASPMERKPAASGSTGGYSGD
LDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=205719 BOQ54_RS10390 WP_055458144.1 2192952..2193455(-) (ssb) [Chelatococcus daeguensis strain TAD1]
ATGGCGGGCAGCGTCAACAAGGTGATCCTCATCGGCAATCTGGGACGCGACCCGGAAGTGCGCACGTTCCAGAACGGCAA
CCGCGTCTGCAACCTGCGCATCGCGACCTCAGAGACGTGGCGGGACAAGACGAGCGGCGAGCGGCGCGAGAAAACCGAAT
GGCACACGGTCGTCATCTTCAACGAGAACCTGCTGCGCGTGGCCGAGCAGTATCTCAAGAAGGGCTCGAAGGTCTATATC
GAAGGTCAGCTCGAAACCCGCAAGGCGACCGATGCCTCGGGCGGGGAACGCTATTTCACCGAGGTTGTGCTGCGCCCGTT
CCGCGGCGAACTGACCATTCTCGACAGCCGCGGCGGCGGCGGCGAGATGGGTGAAGACGGCGGCGGCTTCGGCGGCTCGC
GCGGCTCGGATTTCGGCCGCGCCTCGCCGATGGAGCGCAAGCCGGCCGCCTCGGGCAGCACAGGCGGCTACTCTGGCGAT
CTCGACGACGATATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.133

100

0.509
  ssb Glaesserella parasuis strain SC1401

50.625

95.808

0.485
  ssb Neisseria gonorrhoeae MS11

39.891

100

0.437
  ssb Neisseria meningitidis MC58

40.11

100

0.437

Multiple sequence alignment