Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   CA696_RS11015 Genome accession   NZ_CP023142
Coordinates   2168278..2169288 (+) Length   336 a.a.
NCBI ID   WP_000568522.1    Uniprot ID   Q8FGR3
Organism   Escherichia coli strain CFSAN061770     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2163278..2174288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA696_RS10985 (CA696_010985) nudB 2165002..2165454 (+) 453 WP_076611058.1 dihydroneopterin triphosphate diphosphatase -
  CA696_RS10990 (CA696_010990) yebC 2165483..2166223 (+) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  CA696_RS10995 (CA696_010995) ruvC 2166258..2166779 (+) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  CA696_RS11000 (CA696_011000) yebB 2166781..2167383 (-) 603 WP_001024936.1 YebB family permuted papain-like enzyme -
  CA696_RS11005 (CA696_011005) yobI 2167454..2167519 (+) 66 WP_072123646.1 stress response small protein YobI -
  CA696_RS11010 (CA696_011010) ruvA 2167658..2168269 (+) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  CA696_RS11015 (CA696_011015) ruvB 2168278..2169288 (+) 1011 WP_000568522.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  CA696_RS11020 (CA696_011020) znuB 2169440..2170225 (-) 786 WP_000571478.1 zinc ABC transporter permease subunit ZnuB -
  CA696_RS11025 (CA696_011025) znuC 2170222..2170977 (-) 756 WP_000202988.1 zinc ABC transporter ATP-binding protein ZnuC -
  CA696_RS11030 (CA696_011030) znuA 2171056..2171988 (+) 933 WP_001376899.1 zinc ABC transporter substrate-binding protein ZnuA -
  CA696_RS11035 (CA696_011035) mepM 2172004..2173326 (+) 1323 WP_001184045.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37171.80 Da        Isoelectric Point: 4.7818

>NTDB_id=205373 CA696_RS11015 WP_000568522.1 2168278..2169288(+) (ruvB) [Escherichia coli strain CFSAN061770]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TVRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=205373 CA696_RS11015 WP_000568522.1 2168278..2169288(+) (ruvB) [Escherichia coli strain CFSAN061770]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCCGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTCTTTCGCCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGCGCTCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCTGATATCGCTGCTCAGGCGCTGGATATGCTGAATGTCGATGCCGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGCCTGGATAACCTGGCGGCTGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGCGGGCGTATGGCG
ACAGTGCGGGCGTGGAACCACTTCGGCATCACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FGR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

52.941

96.131

0.509
  ruvB Helicobacter pylori 26695

52.366

94.345

0.494

Multiple sequence alignment