Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BOP93_RS23955 Genome accession   NZ_CP018049
Coordinates   5308068..5308583 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas orientalis strain F9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5303068..5313583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BOP93_RS23935 (BOP93_23180) - 5303911..5304870 (-) 960 WP_104504876.1 helix-turn-helix domain-containing protein -
  BOP93_RS23940 (BOP93_23185) - 5304967..5305530 (+) 564 WP_104504877.1 cysteine hydrolase family protein -
  BOP93_RS23945 (BOP93_23190) tam 5305547..5306308 (-) 762 WP_104504878.1 trans-aconitate 2-methyltransferase -
  BOP93_RS23950 (BOP93_23195) - 5306365..5307927 (-) 1563 WP_104504879.1 hypothetical protein -
  BOP93_RS23955 (BOP93_23200) ssb 5308068..5308583 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  BOP93_RS23960 (BOP93_23205) - 5308593..5309987 (-) 1395 WP_104504880.1 MFS transporter -
  BOP93_RS23965 (BOP93_23210) uvrA 5310166..5313000 (+) 2835 WP_065888412.1 excinuclease ABC subunit UvrA -
  BOP93_RS23970 (BOP93_23215) bfr 5313066..5313530 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=205363 BOP93_RS23955 WP_003232445.1 5308068..5308583(-) (ssb) [Pseudomonas orientalis strain F9]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=205363 BOP93_RS23955 WP_003232445.1 5308068..5308583(-) (ssb) [Pseudomonas orientalis strain F9]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGATAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTGGCCGAGATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGATATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AATCGCGTCCGCAGCCAAGCCAGCAGCCTCAGCGTGAGTCGCGTCCAGCGCCACAACAGGCCGCACCGCAGCCGGCTCCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474

Multiple sequence alignment