Detailed information
Bioinformatically predicted
Overview
| Name | comGF | Type | Machinery gene |
| Locus tag | DN94_01905 | Genome accession | CP007565 |
| Coordinates | 339043..339498 (+) | Length | 151 a.a. |
| NCBI ID | AHX74514.1 | Uniprot ID | - |
| Organism | Streptococcus agalactiae strain 138spar | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 334043..344498
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DN94_01890 | - | 336601..336966 (+) | 366 | AHX74512.1 | dipicolinate synthase | - |
| DN94_01895 | comGA | 337138..338109 (+) | 972 | AHX74513.1 | competence protein CglA | Machinery gene |
| DN94_01905 | comGF | 339043..339498 (+) | 456 | AHX74514.1 | competence protein ComGF | Machinery gene |
| DN94_01910 | comGG | 339476..339847 (+) | 372 | AHX74515.1 | hypothetical protein | Machinery gene |
| DN94_01915 | comGH | 339962..340936 (+) | 975 | AHX74516.1 | adenine methyltransferase | Machinery gene |
| DN94_01920 | - | 340968..342161 (+) | 1194 | AHX74517.1 | acetate kinase | - |
| DN94_01925 | - | 342313..342519 (+) | 207 | AHX74518.1 | transcriptional regulator | - |
Sequence
Protein
Download Length: 151 a.a. Molecular weight: 17562.52 Da Isoelectric Point: 9.9599
>NTDB_id=20530 DN94_01905 AHX74514.1 339043..339498(+) (comGF) [Streptococcus agalactiae strain 138spar]
MKNLLLKCKDKKVKAFTLLECLVALVTITGALLVYQGLTKLLAQQIVVMSSSSQSEWVLLTQQLNAEFEGAHLEYLRQNK
LYLRKQDKIVTFGKSNKDDFRKTGYDGRGYQPMVYGLDNRQMSQTKSMVKLVFYFKDGLKRTFYYDFKEET
MKNLLLKCKDKKVKAFTLLECLVALVTITGALLVYQGLTKLLAQQIVVMSSSSQSEWVLLTQQLNAEFEGAHLEYLRQNK
LYLRKQDKIVTFGKSNKDDFRKTGYDGRGYQPMVYGLDNRQMSQTKSMVKLVFYFKDGLKRTFYYDFKEET
Nucleotide
Download Length: 456 bp
>NTDB_id=20530 DN94_01905 AHX74514.1 339043..339498(+) (comGF) [Streptococcus agalactiae strain 138spar]
ATGAAAAATTTATTGTTAAAATGTAAGGATAAGAAGGTTAAAGCATTTACACTTTTAGAATGTTTGGTAGCATTGGTTAC
AATCACAGGAGCTTTGCTAGTTTATCAAGGACTGACAAAATTGTTGGCTCAACAGATAGTAGTGATGTCTTCTTCCAGTC
AGTCTGAATGGGTGTTATTAACTCAGCAACTAAATGCAGAATTCGAAGGTGCTCACTTGGAATATTTAAGACAGAACAAA
CTTTATTTACGTAAGCAAGATAAGATTGTAACCTTTGGCAAATCTAATAAAGATGATTTCCGTAAGACAGGTTATGATGG
TCGAGGTTATCAACCAATGGTTTATGGGTTAGACAATCGTCAAATGAGTCAGACCAAAAGTATGGTAAAACTTGTTTTTT
ATTTTAAGGACGGGTTAAAAAGGACATTTTACTATGATTTTAAAGAAGAAACTTAA
ATGAAAAATTTATTGTTAAAATGTAAGGATAAGAAGGTTAAAGCATTTACACTTTTAGAATGTTTGGTAGCATTGGTTAC
AATCACAGGAGCTTTGCTAGTTTATCAAGGACTGACAAAATTGTTGGCTCAACAGATAGTAGTGATGTCTTCTTCCAGTC
AGTCTGAATGGGTGTTATTAACTCAGCAACTAAATGCAGAATTCGAAGGTGCTCACTTGGAATATTTAAGACAGAACAAA
CTTTATTTACGTAAGCAAGATAAGATTGTAACCTTTGGCAAATCTAATAAAGATGATTTCCGTAAGACAGGTTATGATGG
TCGAGGTTATCAACCAATGGTTTATGGGTTAGACAATCGTCAAATGAGTCAGACCAAAAGTATGGTAAAACTTGTTTTTT
ATTTTAAGGACGGGTTAAAAAGGACATTTTACTATGATTTTAAAGAAGAAACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGF | Streptococcus mutans UA159 |
48.571 |
92.715 |
0.45 |
| comGF | Streptococcus mutans UA140 |
48.571 |
92.715 |
0.45 |
| comGF/cglF | Streptococcus pneumoniae Rx1 |
42 |
99.338 |
0.417 |
| comGF/cglF | Streptococcus pneumoniae D39 |
42 |
99.338 |
0.417 |
| comGF/cglF | Streptococcus pneumoniae R6 |
42 |
99.338 |
0.417 |
| comGF/cglF | Streptococcus pneumoniae TIGR4 |
42 |
99.338 |
0.417 |
| comGF/cglF | Streptococcus mitis SK321 |
44.203 |
91.391 |
0.404 |
| comGF/cglF | Streptococcus mitis NCTC 12261 |
43.478 |
91.391 |
0.397 |
| comGF | Lactococcus lactis subsp. cremoris KW2 |
40.58 |
91.391 |
0.371 |