Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   DN94_01910 Genome accession   CP007565
Coordinates   339476..339847 (+) Length   123 a.a.
NCBI ID   AHX74515.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334476..344847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_01890 - 336601..336966 (+) 366 AHX74512.1 dipicolinate synthase -
  DN94_01895 comGA 337138..338109 (+) 972 AHX74513.1 competence protein CglA Machinery gene
  DN94_01905 comGF 339043..339498 (+) 456 AHX74514.1 competence protein ComGF Machinery gene
  DN94_01910 comGG 339476..339847 (+) 372 AHX74515.1 hypothetical protein Machinery gene
  DN94_01915 comGH 339962..340936 (+) 975 AHX74516.1 adenine methyltransferase Machinery gene
  DN94_01920 - 340968..342161 (+) 1194 AHX74517.1 acetate kinase -
  DN94_01925 - 342313..342519 (+) 207 AHX74518.1 transcriptional regulator -
  DN94_01940 - 343956..344726 (-) 771 AHX74519.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13831.10 Da        Isoelectric Point: 10.0170

>NTDB_id=20531 DN94_01910 AHX74515.1 339476..339847(+) (comGG) [Streptococcus agalactiae strain 138spar]
MILKKKLKAGILLQAIVLAAVFTLVLQFYLARILATERQYHSQIEASKAYLTAQLAYKTIEGDSISGKCYFTGGCASYLQ
EGNYLQVKVTLDKGGNYNHKFYRKIDTLQVPLKSNDNKASHKH

Nucleotide


Download         Length: 372 bp        

>NTDB_id=20531 DN94_01910 AHX74515.1 339476..339847(+) (comGG) [Streptococcus agalactiae strain 138spar]
ATGATTTTAAAGAAGAAACTTAAAGCTGGTATCCTTTTGCAAGCTATTGTATTGGCTGCTGTATTTACACTCGTCTTACA
GTTTTATCTAGCAAGAATATTGGCAACAGAAAGACAGTATCATAGCCAAATTGAAGCAAGTAAAGCTTATTTAACAGCGC
AGTTAGCTTATAAAACAATAGAAGGTGACTCCATATCAGGAAAATGTTATTTTACAGGAGGATGTGCTTCATACCTCCAA
GAAGGGAACTATTTACAAGTTAAGGTTACATTGGATAAGGGAGGAAACTATAACCATAAGTTTTATCGTAAAATAGACAC
TCTCCAAGTACCTCTCAAGTCTAATGATAATAAAGCAAGCCATAAACATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

44.554

82.114

0.366
  comGG Streptococcus mutans UA159

44.554

82.114

0.366

Multiple sequence alignment