Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | A2U21_RS11165 | Genome accession | NZ_CP018034 |
| Coordinates | 2171788..2172984 (-) | Length | 398 a.a. |
| NCBI ID | WP_021110378.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis str. Nagasaki | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2166788..2177984
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A2U21_RS12615 (A2U21_10820) | - | 2167052..2167426 (+) | 375 | WP_075592870.1 | SLC13 family permease | - |
| A2U21_RS11140 (A2U21_10825) | - | 2167504..2167893 (-) | 390 | WP_005711765.1 | SufE family protein | - |
| A2U21_RS11145 (A2U21_10830) | clpP | 2167994..2168575 (+) | 582 | WP_010787003.1 | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | - |
| A2U21_RS11150 (A2U21_10835) | clpX | 2168582..2169832 (+) | 1251 | WP_021110376.1 | ATP-dependent protease ATP-binding subunit ClpX | - |
| A2U21_RS11155 (A2U21_10840) | dapE | 2169906..2171039 (-) | 1134 | WP_005711772.1 | succinyl-diaminopimelate desuccinylase | - |
| A2U21_RS11160 (A2U21_10845) | - | 2171123..2171791 (-) | 669 | WP_021110377.1 | prepilin peptidase | - |
| A2U21_RS11165 (A2U21_10850) | pilC | 2171788..2172984 (-) | 1197 | WP_021110378.1 | type II secretion system F family protein | Machinery gene |
| A2U21_RS11170 (A2U21_10855) | pilB | 2172977..2174362 (-) | 1386 | WP_021110379.1 | GspE/PulE family protein | Machinery gene |
| A2U21_RS11175 (A2U21_10860) | pilA | 2174410..2174874 (-) | 465 | WP_005711781.1 | pilin | Machinery gene |
| A2U21_RS11180 (A2U21_10865) | radA | 2175062..2176438 (+) | 1377 | WP_021110380.1 | DNA repair protein RadA | - |
| A2U21_RS11185 (A2U21_10870) | gmk | 2176491..2177117 (-) | 627 | WP_005711785.1 | guanylate kinase | - |
Sequence
Protein
Download Length: 398 a.a. Molecular weight: 45753.58 Da Isoelectric Point: 10.1227
>NTDB_id=205220 A2U21_RS11165 WP_021110378.1 2171788..2172984(-) (pilC) [Glaesserella parasuis str. Nagasaki]
MNNIYEFQWKGRNRFGQKQTGRQLAESREMLEKRLQQKGYSQLRISRHFALPTAPKKEEINQFMQQLALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFEKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLAKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSNFLQHSILTLIILCVLCFLLIHILNKKTDL
IKRLKFIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQRSLATTLTYLKQGYRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISDGYQQRLDYQIDILSQLLEPMLMVLMGIIVGTILVGLYLPIFDMGAMIE
MNNIYEFQWKGRNRFGQKQTGRQLAESREMLEKRLQQKGYSQLRISRHFALPTAPKKEEINQFMQQLALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFEKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLAKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSNFLQHSILTLIILCVLCFLLIHILNKKTDL
IKRLKFIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQRSLATTLTYLKQGYRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISDGYQQRLDYQIDILSQLLEPMLMVLMGIIVGTILVGLYLPIFDMGAMIE
Nucleotide
Download Length: 1197 bp
>NTDB_id=205220 A2U21_RS11165 WP_021110378.1 2171788..2172984(-) (pilC) [Glaesserella parasuis str. Nagasaki]
ATGAATAACATTTATGAATTTCAATGGAAAGGACGCAACCGCTTTGGACAAAAGCAAACAGGGCGACAGCTTGCCGAAAG
CAGAGAAATGCTAGAAAAACGCTTGCAACAAAAAGGCTATAGCCAGTTACGCATTAGCCGACATTTTGCCTTGCCGACGG
CACCGAAAAAGGAAGAAATTAATCAATTTATGCAACAGTTGGCATTATTAATTCAAGCTAAAATCCCCCTAAAACAGAGT
TTGGTAATGTTGCTGGAAACTTGCCAAAATCGCACCTTTTACCGTTGGCAACAAGAGACAATCCGCTTGATTGAAGCTGG
CTTTGCCTTATCCGTTGCCTTTGAAAAACAGGGGAAATATATCAATCCACAAGAGATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTGATTTTAACCAATATTGCACAACGCCGTGAAAAATCGGAAAAATTAGCCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTACTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGCTCAAAAGGAAAATCATTACCTTTAATTACCGAAATACTCTTTAGCCTATCCAATTTTCTAC
AACACTCTATTTTAACGCTAATTATTTTATGTGTGTTATGTTTTCTATTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTAAACGCCTAAAGTTTATTATATTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAACGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGTTATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCGACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATGGTGT
TAATGGGAATTATTGTAGGAACTATTTTAGTCGGGTTATATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA
ATGAATAACATTTATGAATTTCAATGGAAAGGACGCAACCGCTTTGGACAAAAGCAAACAGGGCGACAGCTTGCCGAAAG
CAGAGAAATGCTAGAAAAACGCTTGCAACAAAAAGGCTATAGCCAGTTACGCATTAGCCGACATTTTGCCTTGCCGACGG
CACCGAAAAAGGAAGAAATTAATCAATTTATGCAACAGTTGGCATTATTAATTCAAGCTAAAATCCCCCTAAAACAGAGT
TTGGTAATGTTGCTGGAAACTTGCCAAAATCGCACCTTTTACCGTTGGCAACAAGAGACAATCCGCTTGATTGAAGCTGG
CTTTGCCTTATCCGTTGCCTTTGAAAAACAGGGGAAATATATCAATCCACAAGAGATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTGATTTTAACCAATATTGCACAACGCCGTGAAAAATCGGAAAAATTAGCCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTACTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGCTCAAAAGGAAAATCATTACCTTTAATTACCGAAATACTCTTTAGCCTATCCAATTTTCTAC
AACACTCTATTTTAACGCTAATTATTTTATGTGTGTTATGTTTTCTATTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTAAACGCCTAAAGTTTATTATATTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAACGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGTTATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCGACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATGGTGT
TAATGGGAATTATTGTAGGAACTATTTTAGTCGGGTTATATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Glaesserella parasuis strain SC1401 |
98.744 |
100 |
0.987 |
| pilC | Haemophilus influenzae 86-028NP |
38.653 |
100 |
0.389 |
| pilC | Haemophilus influenzae Rd KW20 |
38.653 |
100 |
0.389 |