Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC69_RS16455 Genome accession   NZ_CP023061
Coordinates   3103216..3103692 (-) Length   158 a.a.
NCBI ID   WP_001186776.1    Uniprot ID   -
Organism   Escherichia coli strain FORC_069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3098216..3108692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC69_RS16415 (FORC69_3196) ghrA 3098988..3099926 (-) 939 WP_000351313.1 glyoxylate/hydroxypyruvate reductase GhrA -
  FORC69_RS16425 (FORC69_3197) - 3100397..3101239 (-) 843 WP_000014507.1 DUF4942 domain-containing protein -
  FORC69_RS16430 (FORC69_3198) - 3101336..3101533 (-) 198 WP_000839285.1 DUF957 domain-containing protein -
  FORC69_RS16435 (FORC69_3199) - 3101545..3102033 (-) 489 WP_000761668.1 DUF5983 family protein -
  FORC69_RS16440 (FORC69_3200) - 3102030..3102407 (-) 378 WP_000854898.1 TA system toxin CbtA family protein -
  FORC69_RS16445 (FORC69_3201) cbeA 3102454..3102828 (-) 375 WP_001390639.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  FORC69_RS16450 (FORC69_3202) - 3102908..3103129 (-) 222 WP_000692352.1 DUF987 domain-containing protein -
  FORC69_RS16455 (FORC69_3203) radC 3103216..3103692 (-) 477 WP_001186776.1 RadC family protein Machinery gene
  FORC69_RS16460 (FORC69_3204) - 3103708..3104193 (-) 486 WP_000213691.1 antirestriction protein -
  FORC69_RS16465 (FORC69_3205) - 3104285..3105103 (-) 819 WP_001234635.1 DUF932 domain-containing protein -
  FORC69_RS27965 - 3105197..3105375 (+) 179 Protein_3039 hypothetical protein -
  FORC69_RS16480 (FORC69_3207) - 3105514..3105927 (-) 414 WP_000789536.1 hypothetical protein -
  FORC69_RS16485 (FORC69_3209) - 3106197..3106736 (-) 540 WP_001104026.1 DUF4339 domain-containing protein -
  FORC69_RS16490 (FORC69_3211) - 3106862..3107215 (-) 354 WP_224142752.1 hypothetical protein -
  FORC69_RS16495 (FORC69_3212) - 3107449..3108519 (-) 1071 WP_000102620.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17717.37 Da        Isoelectric Point: 7.2020

>NTDB_id=205222 FORC69_RS16455 WP_001186776.1 3103216..3103692(-) (radC) [Escherichia coli strain FORC_069]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAVVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=205222 FORC69_RS16455 WP_001186776.1 3103216..3103692(-) (radC) [Escherichia coli strain FORC_069]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCTGTCGTGGTGCTGGCGCA
CAATCACCCGTCAGGTGAAGTCACCCCCAGCAAGGCAGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.982

71.519

0.386

Multiple sequence alignment