Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A2U20_RS05450 | Genome accession | NZ_CP018032 |
| Coordinates | 1124109..1124651 (+) | Length | 180 a.a. |
| NCBI ID | WP_021115958.1 | Uniprot ID | A0A836YZ57 |
| Organism | Glaesserella parasuis D74 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1119109..1129651
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A2U20_RS05440 (A2U20_05360) | - | 1120513..1120893 (-) | 381 | WP_010786782.1 | YacL family protein | - |
| A2U20_RS05445 (A2U20_05365) | uvrA | 1120978..1123806 (-) | 2829 | WP_021116871.1 | excinuclease ABC subunit UvrA | - |
| A2U20_RS05450 (A2U20_05370) | ssb | 1124109..1124651 (+) | 543 | WP_021115958.1 | single-stranded DNA-binding protein | Machinery gene |
| A2U20_RS05455 (A2U20_05375) | - | 1124805..1126292 (-) | 1488 | WP_021116872.1 | helicase HerA-like C-terminal domain-containing protein | - |
| A2U20_RS05460 (A2U20_05380) | rhlB | 1126302..1127522 (-) | 1221 | WP_021116873.1 | ATP-dependent RNA helicase RhlB | - |
| A2U20_RS05465 (A2U20_05385) | - | 1127586..1127858 (-) | 273 | WP_005712616.1 | HigA family addiction module antitoxin | - |
| A2U20_RS05470 (A2U20_05390) | - | 1127869..1128147 (-) | 279 | WP_010786777.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| A2U20_RS05475 (A2U20_05395) | argF | 1128296..1129306 (+) | 1011 | WP_021116874.1 | ornithine carbamoyltransferase | - |
| A2U20_RS11970 | - | 1129412..1129573 (-) | 162 | WP_021116875.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 19938.78 Da Isoelectric Point: 4.9833
>NTDB_id=205182 A2U20_RS05450 WP_021115958.1 1124109..1124651(+) (ssb) [Glaesserella parasuis D74]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGSGWNQAPAQTNYNQGGYSDNYAQNNNFNGGNATRPQPA
QKPAAQAEPPMDNFDDDIPF
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGSGWNQAPAQTNYNQGGYSDNYAQNNNFNGGNATRPQPA
QKPAAQAEPPMDNFDDDIPF
Nucleotide
Download Length: 543 bp
>NTDB_id=205182 A2U20_RS05450 WP_021115958.1 1124109..1124651(+) (ssb) [Glaesserella parasuis D74]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCAGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGTCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTTTATGTAGAAGGC
AAGCTCAAAACACGAAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTACAAAT
GTTAGACAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTAGCGGTTGGAACCAAGCACCAGCGCAAACCAACT
ACAATCAAGGCGGCTACAGCGACAACTATGCTCAAAATAACAACTTCAATGGGGGCAACGCAACCAGACCGCAACCAGCC
CAAAAACCTGCGGCTCAAGCAGAACCACCAATGGATAATTTTGATGATGATATTCCATTTTAA
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCAGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGTCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTTTATGTAGAAGGC
AAGCTCAAAACACGAAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTACAAAT
GTTAGACAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTAGCGGTTGGAACCAAGCACCAGCGCAAACCAACT
ACAATCAAGGCGGCTACAGCGACAACTATGCTCAAAATAACAACTTCAATGGGGGCAACGCAACCAGACCGCAACCAGCC
CAAAAACCTGCGGCTCAAGCAGAACCACCAATGGATAATTTTGATGATGATATTCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
100 |
100 |
1 |
| ssb | Vibrio cholerae strain A1552 |
50.265 |
100 |
0.528 |
| ssb | Neisseria gonorrhoeae MS11 |
44.505 |
100 |
0.45 |
| ssb | Neisseria meningitidis MC58 |
43.956 |
100 |
0.444 |