Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   A2U20_RS03465 Genome accession   NZ_CP018032
Coordinates   669691..670368 (+) Length   225 a.a.
NCBI ID   WP_021112067.1    Uniprot ID   A0AAJ6D9H1
Organism   Glaesserella parasuis D74     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 664691..675368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2U20_RS03450 (A2U20_03410) aroB 665128..666216 (-) 1089 WP_021117939.1 3-dehydroquinate synthase -
  A2U20_RS03455 (A2U20_03415) aroK 666231..666752 (-) 522 WP_015940157.1 shikimate kinase AroK -
  A2U20_RS03460 (A2U20_03420) - 666982..669537 (-) 2556 WP_043896007.1 penicillin-binding protein 1A -
  A2U20_RS03465 (A2U20_03425) comA 669691..670368 (+) 678 WP_021112067.1 hypothetical protein Machinery gene
  A2U20_RS03470 (A2U20_03430) comB 670344..670865 (+) 522 WP_021112068.1 hypothetical protein Machinery gene
  A2U20_RS03475 (A2U20_03435) comC 670862..671392 (+) 531 WP_043894777.1 hypothetical protein Machinery gene
  A2U20_RS03480 (A2U20_03440) comD 671437..671778 (+) 342 WP_021114623.1 pilus assembly, PilP family protein Machinery gene
  A2U20_RS03485 (A2U20_03445) comE 671788..673050 (+) 1263 WP_021112071.1 type IV pilus secretin PilQ Machinery gene
  A2U20_RS03490 (A2U20_03450) nusB 673129..673542 (+) 414 WP_021112072.1 transcription antitermination factor NusB -
  A2U20_RS03495 (A2U20_03455) thiL 673551..674519 (+) 969 WP_021117941.1 thiamine-phosphate kinase -
  A2U20_RS03500 (A2U20_03460) - 674522..674992 (+) 471 WP_021117942.1 phosphatidylglycerophosphatase A -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26267.32 Da        Isoelectric Point: 7.3026

>NTDB_id=205175 A2U20_RS03465 WP_021112067.1 669691..670368(+) (comA) [Glaesserella parasuis D74]
MGKFFQFRITPQLKPIQVGFFWQENTACIVYFEQEQPHTFYFSSKVEADSFLQQFPFNYQLIQGISHQHIWRKTLILPEL
HSHLKQAEQIIRVLKQSLPLALSEVNIDYHITPLAESHLCQLNLYALRKSNSFDPTAILDCELYCLLRAVGFLTKMTETQ
ILEHSFHIQDKFIHFQNQRIIVEKQNNSTKPIIEVDGLPQAQHLPHFYPYLIALGASLWNGKASI

Nucleotide


Download         Length: 678 bp        

>NTDB_id=205175 A2U20_RS03465 WP_021112067.1 669691..670368(+) (comA) [Glaesserella parasuis D74]
ATGGGTAAATTCTTTCAATTTCGTATAACACCGCAACTCAAACCTATTCAAGTTGGCTTTTTCTGGCAAGAAAATACCGC
TTGTATCGTCTATTTTGAGCAAGAACAACCTCACACCTTTTACTTTTCAAGCAAAGTAGAAGCGGATAGTTTCCTACAAC
AATTTCCCTTTAACTATCAGCTTATTCAAGGCATTTCTCATCAGCATATTTGGCGAAAAACCTTGATACTGCCGGAGCTA
CATTCCCATTTAAAACAAGCTGAGCAAATCATTCGTGTACTCAAACAGAGCCTACCTTTAGCTTTATCTGAAGTAAACAT
TGATTACCACATTACCCCTTTAGCCGAAAGCCACCTTTGCCAGCTTAATCTATATGCTCTAAGAAAAAGCAACAGCTTTG
ACCCAACAGCTATTTTAGATTGCGAACTCTACTGCCTGCTACGAGCGGTAGGATTTCTGACAAAAATGACGGAAACGCAA
ATTCTTGAACACAGTTTCCACATTCAAGACAAATTTATTCACTTTCAAAATCAACGAATTATCGTCGAAAAGCAGAATAA
TAGCACCAAACCAATCATTGAAGTGGACGGCTTGCCCCAAGCTCAACATCTTCCCCACTTTTATCCTTATCTCATTGCAT
TAGGAGCAAGTTTATGGAATGGCAAGGCATCAATCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Glaesserella parasuis strain SC1401

99.556

100

0.996

Multiple sequence alignment