Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BM528_RS01120 Genome accession   NZ_CP018031
Coordinates   243570..244154 (+) Length   194 a.a.
NCBI ID   WP_071978316.1    Uniprot ID   -
Organism   Alteromonas sp. RW2A1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 238570..249154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BM528_RS01105 (BM528_01085) - 239037..240092 (+) 1056 WP_071978313.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  BM528_RS01110 (BM528_01090) galK 240085..241224 (+) 1140 WP_071978314.1 galactokinase -
  BM528_RS01115 (BM528_01095) - 241692..243254 (+) 1563 WP_071978315.1 sodium/sugar symporter -
  BM528_RS01120 (BM528_01100) ssb 243570..244154 (+) 585 WP_071978316.1 single-stranded DNA-binding protein Machinery gene
  BM528_RS01125 (BM528_01105) - 244612..245691 (+) 1080 WP_232230541.1 dienelactone hydrolase family protein -
  BM528_RS18695 - 245761..245901 (+) 141 WP_232230542.1 hypothetical protein -
  BM528_RS01130 (BM528_01110) - 246256..247356 (+) 1101 WP_071978317.1 hypothetical protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21180.11 Da        Isoelectric Point: 4.9658

>NTDB_id=205155 BM528_RS01120 WP_071978316.1 243570..244154(+) (ssb) [Alteromonas sp. RW2A1]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQPQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDRYTTEIIVDQMQMLGGRGGEAGGGNGGYQRPQNNQGGGYQNQGGGYNQAPAQGGQQQGGYNQNQG
GGFNQAAPQGGNQPQPKTPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=205155 BM528_RS01120 WP_071978316.1 243570..244154(+) (ssb) [Alteromonas sp. RW2A1]
ATGGCAACGAAAGGCGTGAACAAGGTCATTCTTGTAGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCGAACGG
AAACGCCGTTGCAAACCTAAGTCTTGCAACTAGCGAAAGCTGGAAGGATCAGCAGGGACAACCGCAAGAGCGCACCGAAT
GGCATCGTTTAACGATGTATCGTCGTTTGGCTGAAATTGCGGGTGAGTACCTAAAGAAAGGTTCGCAGATTTATGTTGAA
GGTAAATTGCAAACTCGTAAGTGGCAAGACCAACAGGGTCAAGACAGATACACCACAGAAATTATTGTAGACCAAATGCA
AATGCTTGGTGGTCGCGGCGGTGAAGCTGGTGGTGGTAACGGCGGTTACCAACGTCCGCAAAATAACCAGGGCGGTGGAT
ACCAAAACCAGGGCGGTGGCTATAATCAAGCACCAGCTCAGGGCGGTCAGCAACAAGGCGGTTACAACCAAAACCAAGGC
GGCGGTTTCAATCAAGCTGCTCCTCAAGGTGGTAATCAGCCTCAGCCAAAAACTCCGCCAATGGCCGAGCCAGACTTTGA
CTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

58.586

100

0.598
  ssb Vibrio cholerae strain A1552

55.446

100

0.577
  ssb Neisseria gonorrhoeae MS11

47.208

100

0.479
  ssb Neisseria meningitidis MC58

47.368

97.938

0.464

Multiple sequence alignment