Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BM523_RS01045 | Genome accession | NZ_CP018026 |
| Coordinates | 239411..240001 (+) | Length | 196 a.a. |
| NCBI ID | WP_012516753.1 | Uniprot ID | F2G3Q0 |
| Organism | Alteromonas mediterranea strain AR43 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 234411..245001
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BM523_RS01030 (BM523_01030) | - | 235029..236084 (+) | 1056 | WP_071950520.1 | UDP-glucose--hexose-1-phosphate uridylyltransferase | - |
| BM523_RS01035 (BM523_01035) | galK | 236077..237216 (+) | 1140 | WP_071950521.1 | galactokinase | - |
| BM523_RS01040 (BM523_01040) | - | 237584..239146 (+) | 1563 | WP_015065962.1 | sodium/sugar symporter | - |
| BM523_RS01045 (BM523_01045) | ssb | 239411..240001 (+) | 591 | WP_012516753.1 | single-stranded DNA-binding protein | Machinery gene |
| BM523_RS01050 (BM523_01050) | - | 240211..241161 (+) | 951 | WP_071950522.1 | hypothetical protein | - |
| BM523_RS01055 (BM523_01055) | - | 241423..242709 (+) | 1287 | WP_196770471.1 | alpha/beta hydrolase family protein | - |
| BM523_RS01060 (BM523_01060) | - | 242828..244957 (-) | 2130 | WP_071950524.1 | alpha-galactosidase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21299.23 Da Isoelectric Point: 4.9562
>NTDB_id=205102 BM523_RS01045 WP_012516753.1 239411..240001(+) (ssb) [Alteromonas mediterranea strain AR43]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGDGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNQSQ
GQGGGYNQAPQGGNPSQPKTPPMAEPDFDFDDDIPF
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGDGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNQSQ
GQGGGYNQAPQGGNPSQPKTPPMAEPDFDFDDDIPF
Nucleotide
Download Length: 591 bp
>NTDB_id=205102 BM523_RS01045 WP_012516753.1 239411..240001(+) (ssb) [Alteromonas mediterranea strain AR43]
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTACGTAGAA
GGTAAATTGCAAACGCGTAAGTGGCAAGATCAGCAAGGTCAGGATAAGTACACTACTGAAATTATCGTAGATCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGATGGTGGCGGCGGAAACGGCGGTTACCAGCGTCCTCAAAACAACCAAGGCGGTTATA
ATCAAGCGCCAGCGCAAGGTGGTTACAACCAGGCTCCACAACAAGGTGGAGGCCAGCAAGGCGGCTATAACCAGAGCCAG
GGCCAAGGCGGTGGTTATAATCAAGCGCCGCAAGGTGGTAACCCGTCACAGCCTAAGACTCCGCCTATGGCTGAACCAGA
CTTCGATTTTGACGACGATATTCCGTTCTAA
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTACGTAGAA
GGTAAATTGCAAACGCGTAAGTGGCAAGATCAGCAAGGTCAGGATAAGTACACTACTGAAATTATCGTAGATCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGATGGTGGCGGCGGAAACGGCGGTTACCAGCGTCCTCAAAACAACCAAGGCGGTTATA
ATCAAGCGCCAGCGCAAGGTGGTTACAACCAGGCTCCACAACAAGGTGGAGGCCAGCAAGGCGGCTATAACCAGAGCCAG
GGCCAAGGCGGTGGTTATAATCAAGCGCCGCAAGGTGGTAACCCGTCACAGCCTAAGACTCCGCCTATGGCTGAACCAGA
CTTCGATTTTGACGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
56 |
100 |
0.571 |
| ssb | Vibrio cholerae strain A1552 |
53.731 |
100 |
0.551 |
| ssb | Neisseria meningitidis MC58 |
46.392 |
98.98 |
0.459 |
| ssb | Neisseria gonorrhoeae MS11 |
46.392 |
98.98 |
0.459 |