Detailed information NTG0020495

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: JHP_RS00215
• Genome accession: NC_000921
• Coordinates: 39589..40719 (+)
• Length: 376 a.a.
• NCBI ID: WP_001045766.1
• Uniprot ID: Q9ZN24
• Organism: Helicobacter pylori J99
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 34589..45719

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHP_RS00180 (jhp0030)	panD	35016..35369 (+)	354	WP_000142257.1	aspartate 1-decarboxylase	-
JHP_RS00185 (jhp0031)	-	35372..35674 (+)	303	WP_000347931.1	YbaB/EbfC family nucleoid-associated protein	-
JHP_RS00190 (jhp0032)	-	35674..36678 (+)	1005	WP_000468465.1	PDZ domain-containing protein	-
JHP_RS00195 (jhp0033)	comB6	36686..37741 (+)	1056	WP_000679725.1	P-type conjugative transfer protein TrbL	Machinery gene
JHP_RS00200	comB7	37757..37870 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
JHP_RS00205 (jhp0034)	comB8	37867..38610 (+)	744	WP_000660577.1	type IV secretion system protein	Machinery gene
JHP_RS00210 (jhp0035)	comB9	38610..39596 (+)	987	WP_001878684.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
JHP_RS00215 (jhp0036)	comB10	39589..40719 (+)	1131	WP_001045766.1	DNA type IV secretion system protein ComB10	Machinery gene
JHP_RS00220 (jhp0037)	-	40789..42201 (+)	1413	WP_000694964.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
JHP_RS00225 (jhp0038)	gmd	42242..43387 (+)	1146	WP_000659868.1	GDP-mannose 4,6-dehydratase	-
JHP_RS00230 (jhp0039)	-	43380..44312 (+)	933	WP_001002487.1	GDP-L-fucose synthase family protein	-
JHP_RS08750	-	44340..44557 (-)	218	Protein_40	anthranilate synthase component I	-
JHP_RS08565	-	44709..45005 (-)	297	WP_000466434.1	hypothetical protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41989.41 Da
• Isoelectric Point: 9.7473

>NTDB_id=20495 JHP_RS00215 WP_001045766.1 39589..40719(+) (comB10) [Helicobacter pylori J99]
MNKWIKGAVVFVGGFATITTFSLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSPKQLDLLASRITPFKQSPKNYEENLIFPVDNPNGIDSFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=20495 JHP_RS00215 WP_001045766.1 39589..40719(+) (comB10) [Helicobacter pylori J99]
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCTTTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAGACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGACTTTTCTCCAAAACAATTAGATTTACTGGCCTCTCGCATCACCCCTTTCAAGCAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATAGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATTACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCAAGCATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGAATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

3D structure

• AlphaFold DB: Q9ZN24

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.479	100	0.955