Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PSJM300_16435 Genome accession   CP003725
Coordinates   3580650..3581207 (+) Length   185 a.a.
NCBI ID   AFN79345.1    Uniprot ID   -
Organism   Pseudomonas stutzeri DSM 10701     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3575650..3586207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSJM300_16415 - 3577671..3578042 (-) 372 AFN79341.1 translation initiation factor SUI1 -
  PSJM300_16420 - 3578183..3579274 (-) 1092 AFN79342.1 FAD-binding oxidoreductase -
  PSJM300_16425 - 3579454..3579951 (+) 498 AFN79343.1 Tfp pilus assembly protein FimT-like protein -
  PSJM300_16430 - 3580072..3580641 (+) 570 AFN79344.1 Tfp pilus assembly protein FimT-like protein -
  PSJM300_16435 pilV 3580650..3581207 (+) 558 AFN79345.1 type IV pilus modification protein PilV Machinery gene
  PSJM300_16440 - 3581204..3582055 (+) 852 AFN79346.1 type 4 fimbrial biogenesis protein PilW -
  PSJM300_16445 - 3582052..3582657 (+) 606 AFN79347.1 Tfp pilus assembly protein PilX-like protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20356.39 Da        Isoelectric Point: 4.6875

>NTDB_id=20495 PSJM300_16435 AFN79345.1 3580650..3581207(+) (pilV) [Pseudomonas stutzeri DSM 10701]
MTTNKGFSLIEVLVALLLTTIGVLGMVALQGRSIQYTQDSVQRNTAIVLAGDLIEIIRANPKELFNMAPPQFPMNSGMKD
TSLLYKEAGEDFNNRAACVASPTRIAKTPQELRDCWADRVEALLPGGTELFKDHVYICRSSAPDICDNKGSMIEVRMAWQ
VREGACLDASDPDNTICTYTVRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=20495 PSJM300_16435 AFN79345.1 3580650..3581207(+) (pilV) [Pseudomonas stutzeri DSM 10701]
ATGACGACCAACAAAGGCTTCAGCCTGATCGAAGTACTCGTGGCATTGCTGCTGACCACCATCGGCGTGCTCGGCATGGT
GGCCTTGCAGGGACGCAGCATCCAGTACACCCAGGATTCCGTGCAACGCAACACCGCCATCGTACTAGCTGGCGACCTGA
TCGAAATCATCCGGGCCAATCCGAAAGAACTCTTCAATATGGCGCCACCGCAATTCCCTATGAACAGCGGCATGAAAGAT
ACCTCCCTGCTCTACAAGGAAGCAGGTGAAGACTTCAATAACCGCGCTGCCTGCGTGGCCAGTCCGACTCGTATCGCCAA
GACCCCTCAGGAACTGCGCGACTGCTGGGCTGACAGGGTCGAGGCACTGCTTCCGGGCGGTACAGAGCTGTTCAAGGACC
ACGTTTACATTTGTCGCAGTTCAGCTCCTGACATTTGCGATAACAAGGGCTCGATGATCGAGGTTCGCATGGCGTGGCAA
GTTCGCGAGGGAGCTTGCCTTGATGCCAGCGATCCCGATAACACCATTTGCACTTACACCGTGCGGGTAGAACCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

45.946

100

0.459

Multiple sequence alignment