Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   PSJM300_13820 Genome accession   CP003725
Coordinates   3022169..3023167 (-) Length   332 a.a.
NCBI ID   AFN78826.1    Uniprot ID   -
Organism   Pseudomonas stutzeri DSM 10701     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3017169..3028167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSJM300_13800 - 3017680..3018483 (+) 804 AFN78822.1 Sir2 family NAD-dependent protein deacetylase -
  PSJM300_13805 - 3018520..3020460 (-) 1941 AFN78823.1 sodium/glucose cotransport protein -
  PSJM300_13810 - 3020619..3021443 (+) 825 AFN78824.1 hypothetical protein -
  PSJM300_13815 - 3021478..3021624 (-) 147 AFN78825.1 hypothetical protein -
  PSJM300_13820 rpoS 3022169..3023167 (-) 999 AFN78826.1 RNA polymerase sigma factor RpoS Regulator
  PSJM300_13825 - 3023265..3024095 (-) 831 AFN78827.1 lipoprotein NlpD -
  PSJM300_13830 - 3024124..3025044 (-) 921 AFN78828.1 hypothetical protein -
  PSJM300_13835 pcm 3025079..3025714 (-) 636 AFN78829.1 protein-L-isoaspartate O-methyltransferase -
  PSJM300_13840 surE 3025756..3026505 (-) 750 AFN78830.1 5'(3')-nucleotidase/polyphosphatase -
  PSJM300_13845 truD 3026505..3027545 (-) 1041 AFN78831.1 tRNA pseudouridine synthase D -
  PSJM300_13850 ispF 3027542..3028015 (-) 474 AFN78832.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 38011.51 Da        Isoelectric Point: 6.6235

>NTDB_id=20491 PSJM300_13820 AFN78826.1 3022169..3023167(-) (rpoS) [Pseudomonas stutzeri DSM 10701]
MALKKEVPEFDVDDAVLLMEPTAGSKRPSEASRVRSIGARSKTTVAKQHKFIDYNRALDATQLYLNEIGFSPLLTPEEEV
HFARLAQKGDPAGRKRMIESNLRLVVKIARRYINRGLSLLDLVEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERA
IMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIAHLLERPVGEVKRMLGLNERVTSVDVSLGPDTDKTLLDT
LTDERPTDPCELLLDDDLAASIDHWLSDLTEKQRDVVIRRFGLRGHESCTLEEVGKEIGLTRERVRQIQVEALKRLREIF
ERNGLSSDALFQ

Nucleotide


Download         Length: 999 bp        

>NTDB_id=20491 PSJM300_13820 AFN78826.1 3022169..3023167(-) (rpoS) [Pseudomonas stutzeri DSM 10701]
ATGGCTCTCAAAAAAGAAGTGCCGGAGTTTGACGTAGACGATGCCGTTCTACTCATGGAACCCACCGCTGGGTCGAAACG
CCCCAGCGAAGCCTCTCGCGTTCGTTCGATTGGTGCCCGATCCAAGACCACGGTCGCCAAGCAGCACAAGTTCATCGATT
ACAACCGGGCGCTCGACGCCACGCAGCTGTACCTCAACGAAATCGGCTTTTCCCCCCTCCTGACTCCCGAAGAAGAAGTG
CATTTCGCTCGCCTGGCCCAGAAGGGCGATCCGGCGGGTCGCAAGCGCATGATCGAGAGCAACCTGCGGCTGGTCGTCAA
GATCGCCCGTCGTTACATCAACCGCGGACTTTCCTTGCTCGACCTGGTGGAGGAGGGCAACTTGGGGCTGATCCGCGCGG
TAGAGAAGTTCGACCCGGAGCGCGGTTTCCGCTTCTCGACCTACGCGACTTGGTGGATCCGGCAGACCATCGAGCGGGCC
ATCATGAACCAGACACGCACCATTCGTCTGCCGATTCATGTGGTCAAGGAGCTGAACGTCTACCTGCGCGCCGCCCGAGA
GCTGACCCAGAAACTCGACCACGAACCCAGCCCGGAAGAAATCGCGCATCTGCTGGAACGACCGGTAGGCGAGGTCAAGC
GCATGCTGGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCGCTGGGGCCGGATACCGACAAGACCCTGCTCGATACG
CTGACCGACGAGCGGCCCACCGATCCCTGCGAGCTGTTGCTGGATGACGATCTTGCCGCCAGCATCGATCACTGGCTGTC
GGATCTCACCGAGAAGCAGCGCGATGTGGTCATCCGCCGCTTCGGACTGCGGGGGCACGAGAGCTGCACCCTGGAGGAGG
TCGGCAAGGAAATCGGCCTTACCCGCGAGCGGGTCCGGCAGATTCAGGTCGAGGCGCTCAAGCGTTTGCGCGAGATATTC
GAGCGCAATGGCCTGTCCAGCGACGCGCTTTTCCAGTAA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(59-92)

Sigma-70 region 3 (Sigma70_r3)

(177-251)

Sigma-70 region 2 (Sigma70_r2)

(97-166)

Sigma-70, region 4 (Sigma70_r4)

(265-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

64.417

98.193

0.633

Multiple sequence alignment