Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   Aba10042_RS03915 Genome accession   NZ_CP023026
Coordinates   822266..823270 (-) Length   334 a.a.
NCBI ID   WP_001154002.1    Uniprot ID   A3M7W1
Organism   Acinetobacter baumannii strain 10042     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 817266..828270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba10042_RS03890 (Aba10042_03850) tolA 817585..818931 (-) 1347 WP_001039143.1 cell envelope integrity protein TolA -
  Aba10042_RS03895 (Aba10042_03855) tolR 818935..819387 (-) 453 WP_001007562.1 protein TolR -
  Aba10042_RS03900 (Aba10042_03860) tolQ 819387..820085 (-) 699 WP_000224630.1 protein TolQ -
  Aba10042_RS03905 (Aba10042_03865) ybgC 820109..820516 (-) 408 WP_001273591.1 tol-pal system-associated acyl-CoA thioesterase -
  Aba10042_RS03910 (Aba10042_03870) - 820727..822061 (-) 1335 WP_000276845.1 M20 family metallopeptidase -
  Aba10042_RS03915 (Aba10042_03875) ruvB 822266..823270 (-) 1005 WP_001154002.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Aba10042_RS03920 (Aba10042_03880) ruvA 823279..823878 (-) 600 WP_000578660.1 Holliday junction branch migration protein RuvA -
  Aba10042_RS03925 (Aba10042_03885) - 823970..825310 (-) 1341 WP_000437078.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36815.05 Da        Isoelectric Point: 4.7936

>NTDB_id=204898 Aba10042_RS03915 WP_001154002.1 822266..823270(-) (ruvB) [Acinetobacter baumannii strain 10042]
MQDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREMGGNL
KSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTR
AGLLTSPLRDRFGIVQRLEFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVN
HEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGRIATNQ
SYLQFGMTPPEPKN

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=204898 Aba10042_RS03915 WP_001154002.1 822266..823270(-) (ruvB) [Acinetobacter baumannii strain 10042]
ATGCAAGACCGTCTAATCAGTGGAACAGAAAAACCTGAAGATCATTTTGATCGGGCTATTCGACCGACGTCACTTGCCGA
TTATATCGGGCAACCAGTCGTACGCGAGCAAATGGAAATTTTCATCGGTGCGGCTCGTGGTCGTGGTGAGGCACTCGATC
ACACACTGATTTTCGGTCCACCGGGCTTAGGAAAAACTACGCTTGCCAATATTATTGCGCGTGAAATGGGTGGCAATCTC
AAATCCACTTCAGGGCCTGTTTTAGAGCGTGCGGGTGATTTGGCTGCAATGCTGACTAACCTTGAAGAAGGCGATGTTTT
ATTTATTGATGAGATTCATCGTCTTTCACCAGTGATTGAAGAAATCCTCTATCCAGCAATGGAAGATTACCAACTCGATA
TCATGATTGGTGAAGGCCCTGCTGCCCGTTCAATTAAACTAGATTTACCCCCTTTTACACTTGTTGCTGCGACCACACGT
GCCGGCTTACTCACCTCGCCTCTACGTGACCGTTTCGGTATTGTGCAACGTCTTGAATTCTATTCTGTAGAAGACTTAAC
TCACATCGTGTCACGATCTGCAAACCTCATGGATGTACCCATTACAGTTGAGGGTGCAGAAGAAGTTGCACGCCGTTCAC
GCGGAACACCGCGTATTGCCAATCGTTTATTACGCCGTGTACGTGACTATGCACAAGTAAAAGGTACAGGCGAAGTTAAC
CATGAAATGGCACAACGTGCGCTTGATATGCTTAATGTCGATAAAGCTGGTTTAGATACCTTAGACCGACGTTATTTAAG
TATGTTGTTAGAACGTTTTGATGGTGGACCTGCTGGTGTTGAAGCCCTTGCAGCTGCTATGGCTGAAGATAGCGGAACAC
TTGAAGATGTTATTGAACCTTATTTAATTCAGCAAGGTTATGTTATGCGTACTGCACGAGGTCGCATTGCAACCAACCAA
TCTTATTTGCAGTTTGGCATGACGCCACCTGAGCCTAAAAACTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-322)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3M7W1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

57.704

99.102

0.572
  ruvB Synechocystis sp. PCC 6803

57.325

94.012

0.539
  ruvB Streptococcus pneumoniae TIGR4

56.113

95.509

0.536
  ruvB Streptococcus pneumoniae R6

56.113

95.509

0.536
  ruvB Streptococcus pneumoniae D39

56.113

95.509

0.536
  ruvB Helicobacter pylori 26695

54.934

91.018

0.5

Multiple sequence alignment