Detailed information NTG0204817

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: Aba10324_RS06595
• Genome accession: NZ_CP023022
• Coordinates: 1370175..1371179 (+)
• Length: 334 a.a.
• NCBI ID: WP_001154002.1
• Uniprot ID: A3M7W1
• Organism: Acinetobacter baumannii strain 10324
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1365175..1376179

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Aba10324_RS06585 (Aba10324_06585)	-	1368135..1369475 (+)	1341	WP_000437078.1	deoxyguanosinetriphosphate triphosphohydrolase	-
Aba10324_RS06590 (Aba10324_06590)	ruvA	1369567..1370166 (+)	600	WP_000578665.1	Holliday junction branch migration protein RuvA	-
Aba10324_RS06595 (Aba10324_06595)	ruvB	1370175..1371179 (+)	1005	WP_001154002.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
Aba10324_RS06600 (Aba10324_06600)	-	1371384..1372748 (+)	1365	WP_034129371.1	M20 family metallopeptidase	-
Aba10324_RS06605 (Aba10324_06605)	ybgC	1372959..1373366 (+)	408	WP_001273591.1	tol-pal system-associated acyl-CoA thioesterase	-
Aba10324_RS06610 (Aba10324_06610)	tolQ	1373390..1374088 (+)	699	WP_000224628.1	protein TolQ	-
Aba10324_RS06615 (Aba10324_06615)	tolR	1374088..1374540 (+)	453	WP_001007562.1	protein TolR	-
Aba10324_RS06620 (Aba10324_06620)	tolA	1374544..1375890 (+)	1347	WP_020753388.1	cell envelope integrity protein TolA	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36815.05 Da
• Isoelectric Point: 4.7936

>NTDB_id=204817 Aba10324_RS06595 WP_001154002.1 1370175..1371179(+) (ruvB) [Acinetobacter baumannii strain 10324]
MQDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREMGGNL
KSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTR
AGLLTSPLRDRFGIVQRLEFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVN
HEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGRIATNQ
SYLQFGMTPPEPKN

Nucleotide

• Length: 1005 bp

>NTDB_id=204817 Aba10324_RS06595 WP_001154002.1 1370175..1371179(+) (ruvB) [Acinetobacter baumannii strain 10324]
ATGCAAGACCGTCTAATCAGTGGAACAGAAAAACCTGAAGATCATTTTGATCGGGCTATTCGACCGACTTCACTTGCCGA
TTATATCGGGCAACCAGTCGTACGCGAGCAAATGGAAATTTTCATCGGTGCGGCTCGTGGTCGTGGTGAAGCACTCGATC
ACACACTGATTTTCGGTCCACCGGGCTTAGGAAAAACCACGCTTGCCAATATTATTGCGCGTGAAATGGGTGGCAATCTC
AAATCCACTTCAGGGCCTGTTTTAGAGCGTGCGGGTGATTTGGCTGCAATGCTGACTAACCTTGAAGAAGGCGATGTTTT
ATTTATTGATGAAATTCACCGTCTTTCACCAGTGATTGAAGAAATTCTTTATCCGGCAATGGAAGATTACCAACTTGATA
TCATGATTGGTGAAGGTCCTGCTGCTCGTTCAATTAAACTCGATTTACCACCTTTTACGCTCGTTGCTGCGACCACACGT
GCCGGCTTACTCACCTCGCCTCTACGTGACCGTTTCGGTATTGTGCAACGTCTTGAATTCTATTCTGTAGAAGACCTAAC
TCACATCGTGTCACGATCTGCAAACCTCATGGATGTACCCATTACAGTTGAGGGTGCAGAAGAAGTTGCACGCCGTTCAC
GCGGAACACCGCGTATTGCCAATCGTTTATTACGCCGTGTACGTGACTATGCACAAGTAAAAGGTACAGGCGAAGTTAAC
CATGAAATGGCACAACGTGCGCTTGATATGCTCAATGTCGATAAAGCTGGTTTAGATACCTTAGACCGACGTTATTTAAG
TATGTTGTTAGAACGTTTTGATGGTGGACCTGCTGGTGTTGAAGCCCTTGCAGCTGCTATGGCTGAAGATAGCGGAACAC
TTGAAGATGTTATTGAACCTTATTTAATTCAGCAAGGTTATGTTATGCGTACTGCACGAGGTCGCATTGCAACCAACCAA
TCTTATTTGCAGTTTGGCATGACGCCACCTGAGCCTAAAAACTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-322)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

3D structure

• AlphaFold DB: A3M7W1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	57.704	99.102	0.572
ruvB	Synechocystis sp. PCC 6803	57.325	94.012	0.539
ruvB	Streptococcus pneumoniae TIGR4	56.113	95.509	0.536
ruvB	Streptococcus pneumoniae R6	56.113	95.509	0.536
ruvB	Streptococcus pneumoniae D39	56.113	95.509	0.536
ruvB	Helicobacter pylori 26695	54.934	91.018	0.5