Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BMF22_RS05265 Genome accession   NZ_CP017961
Coordinates   1069001..1069501 (-) Length   166 a.a.
NCBI ID   WP_005719438.1    Uniprot ID   A0A9X3URY5
Organism   Pasteurella multocida strain Razi_Pm0001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1064001..1074501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMF22_RS05245 (BMF22_05230) - 1065357..1066097 (+) 741 WP_005752670.1 hypothetical protein -
  BMF22_RS05250 (BMF22_05235) qatC 1066097..1067413 (+) 1317 WP_032852289.1 Qat anti-phage system QueC-like protein QatC -
  BMF22_RS05255 (BMF22_05240) qatD 1067410..1068141 (+) 732 WP_005752666.1 Qat anti-phage system TatD family nuclease QatD -
  BMF22_RS05265 (BMF22_05245) ssb 1069001..1069501 (-) 501 WP_005719438.1 single-stranded DNA-binding protein Machinery gene
  BMF22_RS05270 (BMF22_05250) uvrA 1069673..1072503 (+) 2831 Protein_1022 excinuclease ABC subunit UvrA -
  BMF22_RS05275 (BMF22_05255) sodC 1072574..1073134 (+) 561 WP_005737310.1 superoxide dismutase family protein -
  BMF22_RS05280 (BMF22_05260) rlmB 1073220..1073957 (-) 738 WP_005737312.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18673.68 Da        Isoelectric Point: 5.3353

>NTDB_id=204477 BMF22_RS05265 WP_005719438.1 1069001..1069501(-) (ssb) [Pasteurella multocida strain Razi_Pm0001]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTASPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=204477 BMF22_RS05265 WP_005719438.1 1069001..1069501(-) (ssb) [Pasteurella multocida strain Razi_Pm0001]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGTCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTTCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCGCAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47

Multiple sequence alignment