Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   BMF34_RS02290 Genome accession   NZ_CP017952
Coordinates   423380..425359 (+) Length   659 a.a.
NCBI ID   WP_003100861.1    Uniprot ID   A4GU89
Organism   Streptococcus iniae strain 89353     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 418380..430359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMF34_RS02275 (BMF34_02225) - 419345..420456 (+) 1112 WP_089180060.1 IS3-like element IS981 family transposase -
  BMF34_RS02280 (BMF34_02230) pbp3 420548..421756 (-) 1209 WP_017794608.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  BMF34_RS02285 (BMF34_02235) pbp3 421825..423063 (-) 1239 WP_003100860.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  BMF34_RS02290 (BMF34_02240) amiA3 423380..425359 (+) 1980 WP_003100861.1 peptide ABC transporter substrate-binding protein Regulator
  BMF34_RS02295 (BMF34_02245) amiC 425424..426923 (+) 1500 WP_003100862.1 ABC transporter permease Regulator
  BMF34_RS02300 (BMF34_02250) amiD 426923..427849 (+) 927 WP_003100863.1 oligopeptide ABC transporter permease OppC Regulator
  BMF34_RS02305 (BMF34_02255) amiE 427858..428925 (+) 1068 WP_003100864.1 ABC transporter ATP-binding protein Regulator
  BMF34_RS02310 (BMF34_02260) amiF 428918..429841 (+) 924 WP_003100865.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73178.72 Da        Isoelectric Point: 6.5305

>NTDB_id=204319 BMF34_RS02290 WP_003100861.1 423380..425359(+) (amiA3) [Streptococcus iniae strain 89353]
MKKGKWLAVAGVTILSVSALAACGNNSSKASKGSTYSYVYTSDPDTLDYLVSGRSSTTEITQQGIDGLMEYDRFGNVIPS
LAKDWTVSKDGLTYTYKLRDDVKWYTADGEEYANVTAKDFVAGIKHAADKNSDALYLIQDSIKGLSDYVSGKNKDFSQVG
VKAVDKHTIQYTLNQPESYWNSKLTYGVLAPVNAEFLKSQGKNFGKASDAGSILYNGPFIITALTSKSSIEFVKNDHYWD
KKNVNVDAVQLTYYDGQDQESLFRNFDDGAYSVARLFPTTPSYKTAKKKYGESITYGQQNSTTYYATFNLNRTAYKHTKK
TDDKQKDDTKKAILNKDFRQALTFGFDRMSYQAQSAGQDAANKSLRNVLIPPTFVQINGEDFGKTVEKDLSAYGEQWKGI
NLADAQDGLYNPEKAKAQIAKAKTELEAQGVQFPIHIDFPQDQTATVLMQQAQSMKQSIEATLGKENVVIDILEVPTDTY
NNISYLAETPAQQDWDMSTASGWSPDFTDPSSYLDIFNPNLENAQTKFIGIEPLKNSDVVTAAGLDEFTQLVTDAGKITD
DQTKRYEAYAKAQAALTDSAVYIPTISLGGTPTVSKLVPFSGAFGWAGNKSNNLYYKYIKLQDKPVTAKQYAKALDKWKK
EKEKSNKKYADSLEKHIEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=204319 BMF34_RS02290 WP_003100861.1 423380..425359(+) (amiA3) [Streptococcus iniae strain 89353]
ATGAAAAAAGGGAAATGGCTTGCGGTGGCAGGTGTCACTATTTTATCGGTCTCTGCCTTAGCGGCTTGCGGAAACAACTC
AAGTAAAGCGAGCAAAGGATCTACTTATAGTTATGTTTATACAAGTGACCCAGATACGTTGGATTACTTAGTATCTGGTC
GTTCATCAACAACTGAAATCACCCAACAAGGGATTGATGGCTTGATGGAGTATGATCGTTTTGGAAATGTTATTCCTTCA
CTTGCTAAAGATTGGACAGTTTCAAAAGATGGTCTGACTTATACTTATAAACTGCGTGATGATGTCAAATGGTATACAGC
TGATGGCGAAGAATATGCAAATGTTACTGCAAAGGACTTTGTGGCTGGAATCAAACATGCGGCAGATAAAAACTCAGACG
CCCTTTACCTCATCCAAGATTCAATCAAAGGCTTATCCGACTATGTCAGTGGTAAGAACAAAGACTTCTCACAAGTAGGT
GTTAAGGCTGTTGATAAGCATACCATTCAATACACTTTAAACCAACCCGAATCTTATTGGAATTCTAAGTTGACCTACGG
CGTTTTGGCACCTGTAAATGCAGAGTTCTTGAAATCACAAGGTAAAAACTTTGGTAAAGCATCAGATGCAGGTTCAATCC
TTTACAATGGACCATTTATCATCACTGCTCTAACAAGTAAATCATCAATTGAATTTGTTAAAAATGATCATTATTGGGAC
AAGAAAAATGTTAACGTTGACGCTGTTCAATTAACTTACTACGATGGTCAAGACCAAGAATCACTCTTTAGAAACTTTGA
CGATGGTGCTTATTCAGTCGCACGGTTGTTCCCAACAACGCCATCTTACAAGACTGCTAAGAAAAAATATGGTGAAAGCA
TTACTTATGGTCAACAAAATTCAACGACCTATTATGCAACGTTTAATTTAAACCGTACAGCCTACAAACATACAAAGAAA
ACTGACGATAAACAAAAAGATGATACTAAAAAAGCCATCCTAAACAAAGATTTCCGTCAAGCTTTAACCTTTGGTTTTGA
TAGAATGTCTTACCAAGCACAATCTGCTGGGCAAGATGCTGCTAACAAATCATTGAGAAATGTTTTGATACCGCCTACTT
TTGTTCAAATTAATGGTGAAGATTTTGGGAAGACCGTTGAAAAGGATTTATCGGCTTATGGGGAGCAATGGAAAGGCATT
AATTTAGCAGATGCCCAAGATGGCCTTTATAACCCAGAAAAAGCAAAAGCGCAAATAGCAAAAGCAAAAACTGAATTGGA
AGCTCAAGGTGTTCAATTCCCAATTCACATCGACTTCCCACAAGACCAAACAGCAACAGTCTTGATGCAACAAGCCCAAT
CAATGAAACAATCTATTGAAGCAACATTAGGTAAAGAAAATGTTGTTATTGATATTCTTGAAGTTCCAACAGATACTTAC
AATAACATTTCATATTTAGCTGAAACACCAGCTCAACAGGATTGGGACATGTCAACAGCATCTGGTTGGAGTCCGGACTT
TACTGATCCCTCATCATATCTTGACATCTTTAATCCAAATCTTGAAAATGCGCAAACCAAGTTTATTGGTATTGAACCAT
TGAAAAATTCAGATGTTGTTACAGCGGCAGGTTTAGATGAGTTTACACAGTTAGTTACTGATGCAGGTAAAATCACTGAT
GATCAAACAAAACGTTACGAAGCTTATGCAAAAGCGCAAGCAGCACTTACAGATTCAGCAGTTTATATTCCAACAATCAG
TCTAGGTGGAACTCCAACGGTTTCAAAACTTGTTCCATTTAGTGGAGCCTTTGGTTGGGCAGGAAATAAATCTAATAATC
TTTATTACAAATATATTAAATTACAGGATAAACCTGTTACTGCCAAACAATATGCTAAAGCTTTAGACAAATGGAAAAAA
GAAAAAGAAAAATCAAATAAAAAATATGCGGATTCCCTTGAAAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4GU89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

53.182

100

0.533
  amiA3 Streptococcus thermophilus LMD-9

53.03

100

0.531
  amiA Streptococcus salivarius strain HSISS4

52.656

100

0.527

Multiple sequence alignment