Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   BMF34_RS02300 Genome accession   NZ_CP017952
Coordinates   426923..427849 (+) Length   308 a.a.
NCBI ID   WP_003100863.1    Uniprot ID   -
Organism   Streptococcus iniae strain 89353     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 421923..432849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMF34_RS02290 (BMF34_02240) amiA3 423380..425359 (+) 1980 WP_003100861.1 peptide ABC transporter substrate-binding protein Regulator
  BMF34_RS02295 (BMF34_02245) amiC 425424..426923 (+) 1500 WP_003100862.1 ABC transporter permease Regulator
  BMF34_RS02300 (BMF34_02250) amiD 426923..427849 (+) 927 WP_003100863.1 oligopeptide ABC transporter permease OppC Regulator
  BMF34_RS02305 (BMF34_02255) amiE 427858..428925 (+) 1068 WP_003100864.1 ABC transporter ATP-binding protein Regulator
  BMF34_RS02310 (BMF34_02260) amiF 428918..429841 (+) 924 WP_003100865.1 ATP-binding cassette domain-containing protein Regulator
  BMF34_RS02315 (BMF34_02265) - 430306..431473 (-) 1168 Protein_388 IS30-like element ISSag9 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34540.45 Da        Isoelectric Point: 7.1552

>NTDB_id=204321 BMF34_RS02300 WP_003100863.1 426923..427849(+) (amiD) [Streptococcus iniae strain 89353]
MATIDKSKFEFVELDSYASEVIDAPAYSYWKSVFRQFFARKSTIVMLLILITIILMSFIYPMFANYDFGDVSNINDFTKR
YISPNGEYWFGTDKNGQSLFDGVWYGARNSILISVIATMINMILGVIIGGLWGVSKAVDKVMIEVYNVISNLPQMLIIIV
LTYSIGAGFWNLIFAFCITGWIGIAYAVRVQVLRYRDLEYNLASQTLGTPTHKIVTKNLLPQLVSVIVSMVSLLLPAYIS
SEAFLSFFGLGLPLSEPSLGRLISNYSSNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=204321 BMF34_RS02300 WP_003100863.1 426923..427849(+) (amiD) [Streptococcus iniae strain 89353]
ATGGCGACAATAGACAAAAGTAAGTTCGAATTTGTTGAACTGGATTCTTATGCATCAGAAGTTATTGATGCCCCTGCTTA
CTCCTACTGGAAATCTGTTTTTAGACAATTTTTTGCGCGGAAATCTACTATAGTAATGTTGCTTATTTTGATTACTATTA
TTTTAATGAGCTTTATTTACCCAATGTTTGCCAACTATGATTTTGGTGATGTTAGCAATATCAATGATTTTACCAAGCGC
TACATTTCTCCAAATGGGGAATATTGGTTTGGTACAGATAAAAACGGGCAGTCGCTTTTTGATGGGGTTTGGTATGGTGC
TAGAAACTCAATCTTAATTTCTGTCATTGCAACAATGATTAACATGATTTTGGGTGTAATCATTGGAGGACTTTGGGGTG
TTTCTAAAGCTGTTGATAAAGTAATGATTGAAGTTTACAATGTCATTTCCAATCTGCCACAAATGCTGATTATCATTGTT
TTGACTTACTCCATTGGTGCAGGTTTCTGGAACTTGATTTTTGCTTTTTGTATTACAGGATGGATTGGTATTGCTTACGC
GGTTCGTGTCCAAGTGTTACGTTACCGTGATTTGGAATATAATTTAGCTAGTCAAACACTGGGAACGCCAACACATAAAA
TTGTAACAAAAAACCTTTTACCACAATTGGTTTCAGTTATTGTGTCAATGGTTTCCTTGTTACTTCCAGCCTATATTTCT
TCAGAAGCGTTTCTATCCTTCTTTGGATTAGGCTTACCGCTATCAGAGCCAAGTTTAGGTCGTTTAATTTCAAACTATTC
CTCTAATTTAACAACAAATGCCTATCTTTTCTGGATTCCATTAACCACTCTTATCTTAGTATCTCTTCCACTCTATATTG
TGGGCCAAAATTTGGCAGATGCTAGTGACCCAAGAACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

72.727

100

0.727
  amiD Streptococcus thermophilus LMG 18311

72.403

100

0.724
  amiD Streptococcus thermophilus LMD-9

72.403

100

0.724

Multiple sequence alignment