Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   BMU11_RS05060 Genome accession   NZ_CP017938
Coordinates   1057829..1058962 (-) Length   377 a.a.
NCBI ID   WP_078221357.1    Uniprot ID   -
Organism   Acinetobacter pittii strain YMC2010/8/T346     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1052829..1063962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMU11_RS05035 (BMU11_04875) yeaM 1053001..1053765 (-) 765 WP_078220006.1 AraC family transcriptional regulator -
  BMU11_RS05040 (BMU11_04880) nepI 1053787..1055001 (-) 1215 WP_046813020.1 MFS transporter -
  BMU11_RS05045 (BMU11_04885) - 1055137..1055790 (+) 654 WP_078220007.1 TetR/AcrR family transcriptional regulator -
  BMU11_RS05050 (BMU11_04890) - 1055895..1056815 (+) 921 WP_078220008.1 DMT family transporter -
  BMU11_RS05055 (BMU11_04895) yrdC 1057208..1057777 (-) 570 WP_005072030.1 L-threonylcarbamoyladenylate synthase -
  BMU11_RS05060 (BMU11_04900) dprA 1057829..1058962 (-) 1134 WP_078221357.1 DNA-processing protein DprA Machinery gene
  BMU11_RS05065 (BMU11_04905) tsaP 1058983..1060137 (-) 1155 WP_078220009.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  BMU11_RS05070 (BMU11_04910) def 1060260..1060790 (+) 531 WP_002114101.1 peptide deformylase -
  BMU11_RS05075 (BMU11_04915) - 1060834..1061259 (+) 426 WP_002114087.1 DUF2946 family protein -
  BMU11_RS05080 (BMU11_04920) oprC 1061332..1063446 (+) 2115 WP_078220010.1 TonB-dependent copper receptor -
  BMU11_RS05085 (BMU11_04925) - 1063500..1063706 (+) 207 WP_005072046.1 hypothetical protein -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41847.38 Da        Isoelectric Point: 6.6295

>NTDB_id=204267 BMU11_RS05060 WP_078221357.1 1057829..1058962(-) (dprA) [Acinetobacter pittii strain YMC2010/8/T346]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIVDYFGSCEKAVQPAGLSQWRNLGLHANHLKRVDEFQTAQGQAQFEKLTEQI
QQYTDFILTADDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEQAIVSSTPEI
PEHLINLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=204267 BMU11_RS05060 WP_078221357.1 1057829..1058962(-) (dprA) [Acinetobacter pittii strain YMC2010/8/T346]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAGCTGTGAAAAGGCGGTCCAACCTGCTGGATTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCATTTAAAACGCGTAGATGAATTTCAAACTGCTCAGGGTCAAGCTCAGTTTGAAAAACTAACTGAGCAGATC
CAGCAATATACCGACTTTATTTTAACGGCAGATGACTCAGGTTATCCCACTCAGTTATTACCTTATACAGATCACCCACC
TATCATTTTTGGAAAAGGCCAAGCTCAAGCTTTGTTGCAACCACAAATTGCGATTGTAGGTAGCCGAAAACCAAGCCCAC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTATTACTTAAGTGAAAAAGGTTTTTATGTGAGTAGTGGATTGGCATATGGT
ATTGATGAAGCTGCTCACCAAGGAGCATCAGCACATCAACGTACAATTGCAGTAACAGGAACTGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAATGGCGCGATTATTACTGAATTTTTGCCTGGAACAC
CCCCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTGTTAGTGGTAGAAGCTACA
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCTGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCTACTCAATGGCAAAGTCAGCAACAAAACTCCACCGAGCAGGCTATAGTTTCTAGTACCCCAGAAATT
CCTGAGCATTTAATTAACCTTTATCAATCTTTAGACTGGGTCGGACAAAATATTGATCAGCTTGTCTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

90.981

100

0.91

  dprA Acinetobacter baumannii strain A118

90.451

100

0.905

  dprA Acinetobacter baylyi ADP1

71.391

100

0.721

  dprA Vibrio cholerae strain A1552

43.844

88.329

0.387


Multiple sequence alignment