Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   BMU11_RS02550 Genome accession   NZ_CP017938
Coordinates   538798..539577 (-) Length   259 a.a.
NCBI ID   WP_078219790.1    Uniprot ID   -
Organism   Acinetobacter pittii strain YMC2010/8/T346     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 533798..544577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMU11_RS02530 (BMU11_02450) aroB 533942..535024 (-) 1083 WP_078219787.1 3-dehydroquinate synthase -
  BMU11_RS02535 (BMU11_02455) aroK 535505..536074 (-) 570 WP_078219788.1 shikimate kinase AroK -
  BMU11_RS02540 (BMU11_02460) pilQ 536086..538196 (-) 2111 Protein_477 type IV pilus secretin PilQ -
  BMU11_RS02545 (BMU11_02465) pilP 538259..538786 (-) 528 WP_078219789.1 pilus assembly protein PilP Machinery gene
  BMU11_RS02550 (BMU11_02470) pilO 538798..539577 (-) 780 WP_078219790.1 type 4a pilus biogenesis protein PilO Machinery gene
  BMU11_RS02555 (BMU11_02475) pilN 539574..540215 (-) 642 WP_068526911.1 PilN domain-containing protein Machinery gene
  BMU11_RS02560 (BMU11_02480) pilM 540215..541273 (-) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  BMU11_RS02565 (BMU11_02485) ponA 541435..543996 (+) 2562 WP_032004891.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29435.55 Da        Isoelectric Point: 5.7424

>NTDB_id=204261 BMU11_RS02550 WP_078219790.1 538798..539577(-) (pilO) [Acinetobacter pittii strain YMC2010/8/T346]
MSPDELHELSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFVVDAAPIKDGKSDIPVLNYSIKAKTYRYMGAVENQNNSDPQVINGESQI
NASDSRNVHIPSIKKSKRK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=204261 BMU11_RS02550 WP_078219790.1 538798..539577(-) (pilO) [Acinetobacter pittii strain YMC2010/8/T346]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACCTTAGAAAAATTTCT
TCAGCAATTTAACACGCTCGACATGAACAGTTATGGCAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTACTGGCTTTAGGGTATTTTGTTGCTATTCAACCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAACTTCAAGAGAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
AATGCATGATTTTGTTGTTGACGCTGCTCCTATTAAGGATGGTAAATCAGATATTCCTGTGCTTAATTATTCTATTAAAG
CAAAAACTTATCGCTATATGGGTGCGGTTGAAAACCAAAATAATAGTGATCCTCAAGTGATAAATGGTGAAAGTCAGATA
AACGCCTCCGATAGCCGTAATGTACATATTCCTTCTATAAAGAAGTCAAAGCGAAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

90.179

86.486

0.78
  comO Acinetobacter baylyi ADP1

71.674

89.961

0.645

Multiple sequence alignment