Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   BMU11_RS02555 Genome accession   NZ_CP017938
Coordinates   539574..540215 (-) Length   213 a.a.
NCBI ID   WP_068526911.1    Uniprot ID   -
Organism   Acinetobacter pittii strain YMC2010/8/T346     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 534574..545215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMU11_RS02535 (BMU11_02455) aroK 535505..536074 (-) 570 WP_078219788.1 shikimate kinase AroK -
  BMU11_RS02540 (BMU11_02460) pilQ 536086..538196 (-) 2111 Protein_477 type IV pilus secretin PilQ -
  BMU11_RS02545 (BMU11_02465) pilP 538259..538786 (-) 528 WP_078219789.1 pilus assembly protein PilP Machinery gene
  BMU11_RS02550 (BMU11_02470) pilO 538798..539577 (-) 780 WP_078219790.1 type 4a pilus biogenesis protein PilO Machinery gene
  BMU11_RS02555 (BMU11_02475) pilN 539574..540215 (-) 642 WP_068526911.1 PilN domain-containing protein Machinery gene
  BMU11_RS02560 (BMU11_02480) pilM 540215..541273 (-) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  BMU11_RS02565 (BMU11_02485) ponA 541435..543996 (+) 2562 WP_032004891.1 penicillin-binding protein PBP1a -
  BMU11_RS02570 (BMU11_02490) rrmA 544051..544875 (-) 825 WP_078219791.1 putative RNA methyltransferase -
  BMU11_RS02575 (BMU11_02495) - 544878..545210 (-) 333 WP_068563962.1 DUF7709 family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23935.38 Da        Isoelectric Point: 5.4186

>NTDB_id=204262 BMU11_RS02555 WP_068526911.1 539574..540215(-) (pilN) [Acinetobacter pittii strain YMC2010/8/T346]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=204262 BMU11_RS02555 WP_068526911.1 539574..540215(-) (pilN) [Acinetobacter pittii strain YMC2010/8/T346]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAAAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAATGCTTTTATGAGTTCTTTTTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTCGGGGAAATGGGGGTGACCACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGTGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.732

100

0.887
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685

Multiple sequence alignment