Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   BMU11_RS02545 Genome accession   NZ_CP017938
Coordinates   538259..538786 (-) Length   175 a.a.
NCBI ID   WP_078219789.1    Uniprot ID   -
Organism   Acinetobacter pittii strain YMC2010/8/T346     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 533259..543786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMU11_RS02530 (BMU11_02450) aroB 533942..535024 (-) 1083 WP_078219787.1 3-dehydroquinate synthase -
  BMU11_RS02535 (BMU11_02455) aroK 535505..536074 (-) 570 WP_078219788.1 shikimate kinase AroK -
  BMU11_RS02540 (BMU11_02460) pilQ 536086..538196 (-) 2111 Protein_477 type IV pilus secretin PilQ -
  BMU11_RS02545 (BMU11_02465) pilP 538259..538786 (-) 528 WP_078219789.1 pilus assembly protein PilP Machinery gene
  BMU11_RS02550 (BMU11_02470) pilO 538798..539577 (-) 780 WP_078219790.1 type 4a pilus biogenesis protein PilO Machinery gene
  BMU11_RS02555 (BMU11_02475) pilN 539574..540215 (-) 642 WP_068526911.1 PilN domain-containing protein Machinery gene
  BMU11_RS02560 (BMU11_02480) pilM 540215..541273 (-) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19269.42 Da        Isoelectric Point: 9.7299

>NTDB_id=204260 BMU11_RS02545 WP_078219789.1 538259..538786(-) (pilP) [Acinetobacter pittii strain YMC2010/8/T346]
MKLKKILLSLGIGLVLVGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPSP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=204260 BMU11_RS02545 WP_078219789.1 538259..538786(-) (pilP) [Acinetobacter pittii strain YMC2010/8/T346]
ATGAAACTAAAGAAAATTTTACTTTCTCTGGGGATAGGCTTAGTTTTGGTTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCGGCACCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTGAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCAACAAATTGAGCGAGTGCAGGTAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATTTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCTCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

87.429

100

0.874
  comL Acinetobacter baylyi ADP1

73.964

96.571

0.714

Multiple sequence alignment