Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | K09K1_RS18855 | Genome accession | NZ_CP017919 |
| Coordinates | 2129824..2130363 (+) | Length | 179 a.a. |
| NCBI ID | WP_005387798.1 | Uniprot ID | A0A2I3CBE0 |
| Organism | Vibrio alginolyticus strain K09K1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2124824..2135363
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K09K1_RS18840 (K09K1_37270) | uvrA | 2124898..2127720 (-) | 2823 | WP_086047064.1 | excinuclease ABC subunit UvrA | - |
| K09K1_RS18845 (K09K1_37280) | galU | 2127870..2128742 (-) | 873 | WP_005381239.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| K09K1_RS18850 (K09K1_37290) | qstR | 2128902..2129546 (-) | 645 | WP_005381237.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| K09K1_RS18855 (K09K1_37300) | ssb | 2129824..2130363 (+) | 540 | WP_005387798.1 | single-stranded DNA-binding protein | Machinery gene |
| K09K1_RS18860 (K09K1_37310) | csrD | 2130606..2132615 (+) | 2010 | WP_054728884.1 | RNase E specificity factor CsrD | - |
| K09K1_RS18865 (K09K1_37320) | - | 2132627..2134072 (+) | 1446 | WP_054579427.1 | hypothetical protein | - |
| K09K1_RS18870 (K09K1_37330) | gspM | 2134069..2134719 (+) | 651 | WP_005381197.1 | type II secretion system protein GspM | - |
| K09K1_RS18875 (K09K1_37340) | - | 2134712..2135044 (+) | 333 | WP_005381196.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19902.97 Da Isoelectric Point: 4.9164
>NTDB_id=204112 K09K1_RS18855 WP_005387798.1 2129824..2130363(+) (ssb) [Vibrio alginolyticus strain K09K1]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=204112 K09K1_RS18855 WP_005387798.1 2129824..2130363(+) (ssb) [Vibrio alginolyticus strain K09K1]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAGGTCGTTGTTCAAGGCTT
CAATGGTGTTATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAGGTCGTTGTTCAAGGCTT
CAATGGTGTTATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
79.781 |
100 |
0.816 |
| ssb | Glaesserella parasuis strain SC1401 |
54.922 |
100 |
0.592 |
| ssb | Neisseria meningitidis MC58 |
45.405 |
100 |
0.469 |
| ssb | Neisseria gonorrhoeae MS11 |
46.369 |
100 |
0.464 |