Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   K08M4_RS13205 Genome accession   NZ_CP017916
Coordinates   2926404..2927051 (+) Length   215 a.a.
NCBI ID   WP_086050158.1    Uniprot ID   -
Organism   Vibrio syngnathi strain K08M4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2921404..2932051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M4_RS13190 (K08M4_26400) - 2921946..2923388 (-) 1443 WP_086050156.1 MSHA biogenesis protein MshI -
  K08M4_RS13195 (K08M4_26410) csrD 2923391..2925406 (-) 2016 WP_086050157.1 RNase E specificity factor CsrD -
  K08M4_RS13200 (K08M4_26420) ssb 2925568..2926125 (-) 558 WP_009847868.1 single-stranded DNA-binding protein Machinery gene
  K08M4_RS13205 (K08M4_26430) qstR 2926404..2927051 (+) 648 WP_086050158.1 LuxR C-terminal-related transcriptional regulator Regulator
  K08M4_RS13210 (K08M4_26440) galU 2927206..2928078 (+) 873 WP_086050159.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K08M4_RS13215 (K08M4_26450) uvrA 2928229..2931060 (+) 2832 WP_086050160.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25110.23 Da        Isoelectric Point: 9.4623

>NTDB_id=204071 K08M4_RS13205 WP_086050158.1 2926404..2927051(+) (qstR) [Vibrio syngnathi strain K08M4]
MRKSRYARTLHFLCIDPNETYLHVKEIEKHLSIILYKMTPSELMLVDRKQSNRILLVDYKEVTQLLAICPNLPVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTDQKDKIARGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=204071 K08M4_RS13205 WP_086050158.1 2926404..2927051(+) (qstR) [Vibrio syngnathi strain K08M4]
ATGAGAAAATCTCGATACGCTCGCACTTTACACTTTCTGTGCATCGACCCAAACGAAACCTATCTACACGTAAAAGAAAT
CGAAAAACACTTATCCATTATTCTCTACAAAATGACACCAAGTGAATTGATGCTAGTTGATAGAAAGCAGAGCAATCGTA
TCCTGCTTGTTGATTACAAAGAGGTTACACAGCTACTGGCTATTTGTCCTAACTTACCCGTGATGTGGAAGAATCATGAG
ATAATCTTATTCAATGTGCCTCAGCAACTTCCTACCTCTGAACTGCTAACCTACGGGGTATTAAAAGGACTCTTTTACAA
CACAGATCAAAAGGACAAGATTGCTCGTGGTCTTCAAGAAGTGATCGATGGTGACAACTGGCTACCAAGGAAGGTGACTA
ATCAGCTTCTGTTTTATTATCGTAATATGGTCAATACCAATACGACCCCAACCAATGTTGATTTAACTATTCGTGAAATC
CAAGTCATTCGCTGCCTTCAATCAGGATCATCCAATACCCAAATAGCCGATGACCTGTTCATTAGTGAATTTACGGTCAA
GTCTCATCTCTATCAAATATTTCGTAAATTAGCGGTAAAGAATAGAGTTCAAGCTATTGCATGGGCAAACCAAAACTTGC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

53.488

100

0.535
  qstR Vibrio campbellii strain DS40M4

53.023

100

0.53
  qstR Vibrio cholerae strain A1552

48.131

99.535

0.479

Multiple sequence alignment