Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | K08M4_RS13200 | Genome accession | NZ_CP017916 |
| Coordinates | 2925568..2926125 (-) | Length | 185 a.a. |
| NCBI ID | WP_009847868.1 | Uniprot ID | A0A2N7NKE0 |
| Organism | Vibrio syngnathi strain K08M4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2920568..2931125
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K08M4_RS13180 (K08M4_26380) | - | 2920974..2921306 (-) | 333 | WP_086050154.1 | MSHA biogenesis protein MshK | - |
| K08M4_RS13185 (K08M4_26390) | pilO | 2921299..2921946 (-) | 648 | WP_086050155.1 | type 4a pilus biogenesis protein PilO | - |
| K08M4_RS13190 (K08M4_26400) | - | 2921946..2923388 (-) | 1443 | WP_086050156.1 | MSHA biogenesis protein MshI | - |
| K08M4_RS13195 (K08M4_26410) | csrD | 2923391..2925406 (-) | 2016 | WP_086050157.1 | RNase E specificity factor CsrD | - |
| K08M4_RS13200 (K08M4_26420) | ssb | 2925568..2926125 (-) | 558 | WP_009847868.1 | single-stranded DNA-binding protein | Machinery gene |
| K08M4_RS13205 (K08M4_26430) | qstR | 2926404..2927051 (+) | 648 | WP_086050158.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| K08M4_RS13210 (K08M4_26440) | galU | 2927206..2928078 (+) | 873 | WP_086050159.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| K08M4_RS13215 (K08M4_26450) | uvrA | 2928229..2931060 (+) | 2832 | WP_086050160.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 185 a.a. Molecular weight: 20430.55 Da Isoelectric Point: 5.2358
>NTDB_id=204070 K08M4_RS13200 WP_009847868.1 2925568..2926125(-) (ssb) [Vibrio syngnathi strain K08M4]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGSWGQPQQPQQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGSWGQPQQPQQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 558 bp
>NTDB_id=204070 K08M4_RS13200 WP_009847868.1 2925568..2926125(-) (ssb) [Vibrio syngnathi strain K08M4]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGCGAAAAAACAG
AGTGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACGCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACAGAAGTCGTTGTTCAAGGCTT
CAATGGTGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGCGGTGCTCCTGCCCAAGGTGGTATGGGTAACAACCAACAGC
AAGGTAGTTGGGGTCAACCACAGCAGCCACAACAGCAGCAACAACAATACAGTGCGCCTGCTCAACAGCAGCCAAAAGCA
CCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCGATGGATTTTGATGATGACATCCCATTTTAA
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGCGAAAAAACAG
AGTGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACGCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACAGAAGTCGTTGTTCAAGGCTT
CAATGGTGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGCGGTGCTCCTGCCCAAGGTGGTATGGGTAACAACCAACAGC
AAGGTAGTTGGGGTCAACCACAGCAGCCACAACAGCAGCAACAACAATACAGTGCGCCTGCTCAACAGCAGCCAAAAGCA
CCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCGATGGATTTTGATGATGACATCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
82.258 |
100 |
0.827 |
| ssb | Glaesserella parasuis strain SC1401 |
57.447 |
100 |
0.584 |
| ssb | Neisseria meningitidis MC58 |
47.568 |
100 |
0.476 |
| ssb | Neisseria gonorrhoeae MS11 |
47.568 |
100 |
0.476 |