Detailed information NTG0204013

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K08M3_RS13585
• Genome accession: NZ_CP017913
• Coordinates: 2883889..2884875 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain K08M3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2878889..2889875

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K08M3_RS13570 (K08M3_26540)	recA	2879434..2880477 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
K08M3_RS13575 (K08M3_26550)	pncC	2880678..2881160 (-)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
K08M3_RS13580 (K08M3_26560)	mutS	2881245..2883806 (+)	2562	WP_086047036.1	DNA mismatch repair protein MutS	-
K08M3_RS13585 (K08M3_26570)	rpoS	2883889..2884875 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
K08M3_RS13590 (K08M3_26580)	-	2884956..2885879 (-)	924	WP_054730358.1	peptidoglycan DD-metalloendopeptidase family protein	-
K08M3_RS13595 (K08M3_26590)	-	2885893..2886519 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K08M3_RS13600 (K08M3_26600)	surE	2886519..2887295 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
K08M3_RS13605 (K08M3_26610)	truD	2887295..2888338 (-)	1044	WP_054730361.1	tRNA pseudouridine(13) synthase TruD	-
K08M3_RS13610 (K08M3_26620)	ispF	2888384..2888860 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K08M3_RS13615 (K08M3_26630)	ispD	2888875..2889582 (-)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K08M3_RS13620 (K08M3_26640)	ftsB	2889584..2889865 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=204013 K08M3_RS13585 WP_005380887.1 2883889..2884875(-) (rpoS) [Vibrio alginolyticus strain K08M3]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=204013 K08M3_RS13585 WP_005380887.1 2883889..2884875(-) (rpoS) [Vibrio alginolyticus strain K08M3]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGATAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCATGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAGGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGACGCTTCGGCCTACTAGGCTATGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854