NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	CGP96_RS08435	Genome accession	NZ_CP022900
Coordinates	1705921..1706607 (-)	Length	228 a.a.
NCBI ID	WP_000692881.1	Uniprot ID	-
Organism	Staphylococcus aureus strain 468
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1700921..1711607

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CGP96_RS08390 (CGP96_01551)	rpmA	1701635..1701919 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
CGP96_RS08395 (CGP96_01552)	-	1701931..1702251 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
CGP96_RS08400 (CGP96_01553)	rplU	1702257..1702565 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
CGP96_RS08405 (CGP96_01554)	mreD	1702858..1703388 (-)	531	WP_001259929.1	rod shape-determining protein MreD	-
CGP96_RS08410 (CGP96_01555)	mreC	1703388..1704230 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
CGP96_RS08415	-	1704430..1704549 (-)	120	WP_000840603.1	hypothetical protein	-
CGP96_RS08420 (CGP96_01556)	-	1704623..1705096 (-)	474	WP_001236733.1	DUF4930 family protein	-
CGP96_RS08425	-	1705256..1705453 (+)	198	WP_000025835.1	hypothetical protein	-
CGP96_RS08430 (CGP96_01557)	-	1705569..1705853 (-)	285	WP_000171861.1	hypothetical protein	-
CGP96_RS08435 (CGP96_01558)	ysxA/radC	1705921..1706607 (-)	687	WP_000692881.1	DNA repair protein RadC	Machinery gene
CGP96_RS08440 (CGP96_01559)	-	1706604..1707311 (-)	708	WP_000261106.1	A24 family peptidase	-
CGP96_RS08450 (CGP96_01560)	-	1707572..1708843 (-)	1272	WP_001108339.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
CGP96_RS08455 (CGP96_01561)	-	1708856..1711486 (-)	2631	WP_000425358.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25345.25 Da Isoelectric Point: 6.7572

                                >NTDB_id=203830 CGP96_RS08435 WP_000692881.1 1705921..1706607(-) (ysxA/radC) [Staphylococcus aureus strain 468]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREFFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=203830 CGP96_RS08435 WP_000692881.1 1705921..1706607(-) (ysxA/radC) [Staphylococcus aureus strain 468]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG

CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAATTTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

AATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGAATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus gordonii str. Challis substr. CH1	39.45	95.614	0.377
radC	Streptococcus pneumoniae TIGR4	40.566	92.982	0.377
radC	Streptococcus pneumoniae R6	40.094	92.982	0.373
radC	Streptococcus pneumoniae D39	40.094	92.982	0.373

Detailed information NTG0203830