Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K04M5_RS14455 Genome accession   NZ_CP017899
Coordinates   3053910..3054449 (-) Length   179 a.a.
NCBI ID   WP_005387798.1    Uniprot ID   A0A2I3CBE0
Organism   Vibrio alginolyticus strain K04M5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3048910..3059449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K04M5_RS14435 (K04M5_28260) - 3049229..3049561 (-) 333 WP_005381196.1 hypothetical protein -
  K04M5_RS14440 (K04M5_28270) gspM 3049554..3050204 (-) 651 WP_005381197.1 type II secretion system protein GspM -
  K04M5_RS14445 (K04M5_28280) - 3050201..3051646 (-) 1446 WP_054579427.1 hypothetical protein -
  K04M5_RS14450 (K04M5_28290) csrD 3051658..3053667 (-) 2010 WP_054728884.1 RNase E specificity factor CsrD -
  K04M5_RS14455 (K04M5_28300) ssb 3053910..3054449 (-) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene
  K04M5_RS14460 (K04M5_28310) qstR 3054727..3055371 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  K04M5_RS14465 (K04M5_28320) galU 3055531..3056403 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K04M5_RS14470 (K04M5_28330) uvrA 3056553..3059375 (+) 2823 WP_086047064.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19902.97 Da        Isoelectric Point: 4.9164

>NTDB_id=203818 K04M5_RS14455 WP_005387798.1 3053910..3054449(-) (ssb) [Vibrio alginolyticus strain K04M5]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=203818 K04M5_RS14455 WP_005387798.1 3053910..3054449(-) (ssb) [Vibrio alginolyticus strain K04M5]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAGGTCGTTGTTCAAGGCTT
CAATGGTGTTATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CBE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.781

100

0.816
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

45.405

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.464

Multiple sequence alignment