Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   SPG_1199 Genome accession   CP001015
Coordinates   1168237..1168683 (-) Length   148 a.a.
NCBI ID   ACF55769.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1163237..1173683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_1192 - 1163569..1164504 (+) 936 ACF55848.1 conserved hypothetical protein -
  SPG_1193 rpmE 1164600..1164842 (+) 243 ACF56565.1 ribosomal protein L31 -
  SPG_1194 - 1164899..1165117 (-) 219 ACF55402.1 hypothetical protein -
  SPG_1195 - 1165114..1165275 (-) 162 ACF56023.1 transposase, putative -
  SPG_1196 - 1165425..1165676 (-) 252 ACF56871.1 IS630-SpnII, transposase -
  SPG_1197 gdhA 1166202..1167548 (+) 1347 ACF54796.1 glutamate dehydrogenase -
  SPG_1198 - 1168054..1168224 (-) 171 ACF55156.1 conserved hypothetical protein -
  SPG_1199 comA/nlmT 1168237..1168683 (-) 447 ACF55769.1 ABC transporter, ATP-binding protein Regulator
  SPG_1200 - 1168873..1169220 (-) 348 ACF55480.1 transposase -
  SPG_1201 - 1169237..1169635 (-) 399 ACF56037.1 transposase -
  SPG_1202 - 1169728..1169886 (-) 159 ACF54970.1 IS66-Spn1, transposase -
  SPG_1203 - 1170149..1170319 (-) 171 ACF55141.1 IS66-Spn1, transposase -
  SPG_1204 - 1170481..1170792 (-) 312 ACF55629.1 IS66-Spn1, transposase -
  SPG_1205 - 1170954..1171106 (+) 153 ACF56372.1 IS630-SpnII, transposase -
  SPG_1206 - 1171375..1171698 (-) 324 ACF55090.1 IS66-Spn1, transposase -
  SPG_1207 - 1171679..1171918 (-) 240 ACF55667.1 IS66-Spn1, transposase -
  SPG_1208 ntpD 1172137..1172748 (-) 612 ACF56009.1 V-type sodium ATP synthase, subunit D -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16640.28 Da        Isoelectric Point: 7.8676

>NTDB_id=20369 SPG_1199 ACF55769.1 1168237..1168683(-) (comA/nlmT) [Streptococcus pneumoniae G54]
MNRSILDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMKFNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSA
LDTINEERITKYIQSQGCTQIIVAHRLSTIKDADVIFVMKGGKIVESGNHKYLMDLGGEYYSLYTKRK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=20369 SPG_1199 ACF55769.1 1168237..1168683(-) (comA/nlmT) [Streptococcus pneumoniae G54]
TTGAACCGAAGTATTCTTGATAATATAACTTTAAAGCACGAAGTTACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGT
TCAAATCTATGATGAAATCATGGCTATGCCGATGAAATTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTG
GGCAAAGGCAACGGATAGCACTGGCACGTGCATTAATAAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCA
TTAGACACTATTAATGAGGAAAGAATAACAAAGTATATACAAAGTCAGGGCTGTACTCAAATAATTGTAGCTCATAGATT
GTCAACGATTAAGGATGCGGATGTTATTTTTGTAATGAAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAA
TGGATCTTGGTGGAGAGTACTACAGCTTATATACAAAAAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

47.222

97.297

0.459
  comA Streptococcus gordonii str. Challis substr. CH1

43.537

99.324

0.432
  comA Streptococcus mitis NCTC 12261

42.759

97.973

0.419
  comA Streptococcus mitis SK321

42.069

97.973

0.412
  comA Streptococcus pneumoniae TIGR4

41.379

97.973

0.405
  comA Streptococcus pneumoniae Rx1

41.379

97.973

0.405
  comA Streptococcus pneumoniae D39

41.379

97.973

0.405
  comA Streptococcus pneumoniae R6

41.379

97.973

0.405
  rcrQ Streptococcus mutans UA159

39.13

93.243

0.365

Multiple sequence alignment